Alteromonas macleodii Black Sea 11: AMBLS11_03590
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Entry
AMBLS11_03590 CDS
T02260
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
amk
Alteromonas macleodii Black Sea 11
Pathway
amk02020
Two-component system
amk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AMBLS11_03590
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AMBLS11_03590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amk03021
]
AMBLS11_03590
Transcription machinery [BR:
amk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AMBLS11_03590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AFT77308
LinkDB
All DBs
Position
complement(836466..837947)
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AA seq
493 aa
AA seq
DB search
MKPSLQLKFSQQLTMTPQLQQAIKLLQLSTLDLQQEIQEALDSNPLLEIEEGNDEPQLEK
NNIDNDDSGSEATASASSDTLEAGDALEKNDLPDELPIDSTWDEYYSASSAPAPGPSNDD
EQIFQGETTEDIQEHLLWQMRLTHFSDTDRAIATAIIDSIDESGYLTVTLDDILEAVNDD
DMEEPIEMDEVECVLKRIQMFDPIGSGSRSPQECLMVQLRQFSEDTPWLAEAKQLIEEYS
DLLSSKDYRTLMRKSRLKEDQLREAMRLLQTLNPRPGSALVTKEPEYVIPDVSVTKKNGR
WVVELNPDSLPKLSVNQQYAAMSRRAKNSSDSQFIRSHMQEAKWFIKSLESRNETLMKVA
NCIVQQQMGFFEHGPEMMKPMVLNDVAEMVDMHESTISRVTTQKYMHTPRGIFELKYFFS
SHVATESGGECSSTAIRALIKKLVAAEKPSKPLSDSKIASLLAEQGIKVARRTIAKYRES
LSIPPSNQRKSLI
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatctttacagctaaaatttagccaacaacttaccatgacacctcagcttcag
caggccattaaactgctgcagctttctacacttgatcttcagcaggagatccaagaagcg
ctcgactctaatccactattggaaattgaagaaggtaacgacgagccacagttagaaaag
aataatatcgacaacgatgacagcggctctgaggccactgcttccgcgtctagtgacacg
ttagaagcgggtgatgcattagagaaaaatgaccttcccgacgagctacctatcgatagc
acgtgggatgaatattactcagcttcatctgcgccagctccaggcccgtctaatgacgac
gagcaaatctttcaaggcgagaccacagaagacattcaagaacaccttctgtggcaaatg
cgccttactcatttctctgacactgaccgcgctatcgccacggctatcatcgattctatt
gacgagtcaggctatttgaccgttacgctagacgatattttagaagcagttaacgacgat
gatatggaagagccgatagaaatggacgaagttgaatgtgtgcttaaacgcattcaaatg
tttgatcccattggttcaggttctcgctctccgcaagagtgccttatggtgcaattgcgt
cagttttcagaagacacgccgtggcttgctgaagcgaaacaattgattgaagagtactct
gacttactgagcagcaaagactatcgcaccctgatgcgtaaaagccgattgaaagaagat
cagctacgcgaagcaatgcgtttacttcaaaccttgaatcctcgcccaggtagtgcttta
gttactaaagagcctgagtatgttattcctgatgtctcagtaaccaagaaaaatggccgt
tgggtggttgagctgaaccccgacagtctgcctaaattaagcgtaaaccaacagtacgct
gcaatgagtcgccgtgcgaagaatagtagcgactcacaattcatccgctcacacatgcaa
gaggccaagtggttcattaaaagccttgaatctcgtaacgaaaccttgatgaaggttgca
aactgcattgtgcagcaacaaatgggcttttttgagcacggcccggaaatgatgaaacca
atggtgctaaatgatgtcgcagaaatggtagatatgcacgaatcgactatttcgcgtgtg
acaacgcaaaagtatatgcatacgccacgtggaattttcgaattgaagtatttcttctct
agccacgttgcaactgagtctggtggtgaatgttcatctacagcgattcgtgcattgatc
aagaaattagtggcagctgaaaagcctagcaagccgctaagtgatagcaagattgcttca
ttgttggccgaacaaggcattaaagttgcccggcgaacaatagcaaagtaccgggaatcg
ttgtcgatcccgccgtcgaaccaacgcaagagccttatttaa
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