KEGG   Ailuropoda melanoleuca (giant panda): 100464510Help
Entry
100464510         CDS       T01329                                 

Gene name
LIG3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
aml  Ailuropoda melanoleuca (giant panda)
Pathway
aml03410  Base excision repair
Module
aml_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:aml00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    100464510 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aml03400]
    100464510 (LIG3)
Enzymes [BR:aml01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100464510 (LIG3)
DNA repair and recombination proteins [BR:aml03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     100464510 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 100464510
NCBI-ProteinID: XP_011228622
Ensembl: ENSAMEG00000014509
LinkDB All DBs
Position
Un
AA seq 996 aa AA seqDB search
MTLAFKILFPPTLRALRRKELCLFREQHHWPDRRQFGHWSETDLLHGHCLLQRRKPALSF
QEGHLRPRATCLVFLPGVHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQ
HIADLSSKATGTPKKKAVVQAKLTATGQVTSPVKGVSLVTNSNPRKFSGFSAKPNNSGAA
RSSPPPKASLSSSRCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLRKGSAGDGF
HGDVHLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFTCSPDDMARDLEQGDVSETIRVFFE
QSKSFPPAAKSLLTIQEVDEFLLRLSRLTKEDEQQQALQDIASRCTANDLKCIIRLIKHD
LKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGRRRALSVQASLMT
PVQPMLAEACKSIEHAMKKCPNGMFSEIKYDGERVQVHKNGDRFNYFSRSLKPVLPHKVA
HFKDYIPQAFPGGHSMILDSEVLLIDTKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIY
FNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKQVTKAADLADMINRVIREGLEGLVL
KDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPD
SQKWCTVTKCSGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKTYYPDFIVPDPKKA
AVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKERADFT
VAAGEEGSSTTGGSSGENEGTSGPAGARKASRASPKQPSTSAKKAGGRLSSPNRRGGHQP
TVKVGQKRKAPAETPCPAKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFDMA
SATHVLGSRDKNPEAQQVSPEWIWACIRKRRLVAPC
NT seq 2991 nt NT seq  +upstreamnt  +downstreamnt
atgaccttggctttcaagatcctcttcccaccaaccctccgcgctctcaggcggaaagaa
ctgtgcctcttccgagagcagcatcactggcctgacagaagacagtttggccattggtca
gaaacagatctgcttcatgggcactgcctcctccagagaagaaagcctgctctgtctttc
caggaaggccatctaagaccacgtgccacctgccttgttttcctgccaggggtgcatgtg
ggactctgcagcggcccctgtgagatggccgagcaacggttctgtgtggactatgccaag
cgtggcacagccggctgcaaaaagtgcaaggagaaaattgtgaagggtgtatgccggatc
ggcaaagtggtgcccaatcccttctcagagtccgggggtgatatgaaagagtggtatcac
attaaatgcatgtttgagaaactggagcgggcccgggccaccacaaaaaaaattgaggac
ctcacagagctggaaggctgggaagagctggaagacaacgagaaggaacagataagccag
cacattgcagatctgtcttctaaggccacaggcacgccaaagaagaaagccgttgtccag
gctaagctgacagccactggccaggtgacctctccagtgaaaggtgtctctctcgtcacc
aatagcaatccccggaaattttctggtttttcagccaagcccaacaactctggggcagcc
cgctcaagccctccccctaaggcaagtttgtcctcaagcagatgtgaccccaagcacaag
gattgtctgctacgtgagtttcggaagttgtgtgccatggtggctgagaatcctagctac
aacacgaagacccagatcatccaggactttcttcggaaaggttcagcaggagatggtttc
cacggagatgtgcacctcacggtgaagctgctgctcccaggcgttatcaagagtgtttac
aacctgaacgataagcagattgtgaagctcttcagccgcatttttacctgcagcccagat
gatatggcgcgagacctagaacagggcgacgtgtcagagaccatcagagtcttctttgag
cagagcaagtctttccccccagctgccaagagcctccttaccatccaggaggtggacgaa
ttcctcctccggctttccaggctcaccaaggaggacgagcagcagcaggccctgcaggac
atcgcctccaggtgtacggccaatgaccttaagtgcatcatcagattgatcaaacacgat
ctgaagatgaatgcgggtgcaaagcacgtgttagatgcccttgaccccaatgcctatgaa
gccttcaaagcatcgcgcaacctgcaggacgtggtggagcgggtcctccgcaatgagcag
gaggtggagaaggagccaggccggagacgcgcgctgagtgtccaggcttccctgatgacg
ccagtgcagcccatgctggccgaggcctgcaagtccatcgagcacgcgatgaagaagtgt
cctaacggcatgttctctgagatcaagtacgacggggagcgagtgcaggtgcataagaac
ggggaccgtttcaactacttcagccgtagcctcaagcctgtcctgcctcacaaggtggcc
cacttcaaggactatatccctcaggctttccccgggggccacagcatgatcttggactct
gaggtgctcctgatcgacacgaagacaggcaaaccgctgccctttgggactcttggggtg
cacaagaaagctgccttccaggatgctaatgtttgcctgtttgtgtttgattgtatctac
ttcaatgatgtcagcttgatggacaggcctctgtgtgagcggcggaagtttcttcatgat
aacatggttgaaattcccaaccggatcatgttctcagaaatgaagcaagtcactaaagct
gcagacttggccgacatgataaaccgggtaatccgagaggggctggaagggctggtgctg
aaagacgtgaagggtacatatgagcctggaaagcggcactggctaaaagtgaagaaggac
tatttgaacgagggggccatggctgacacagctgacctggtggtccttggggccttctac
gggcaagggagcaaaggtggcatgatgtccatcttcctcatgggctgctacgacccagac
agccagaagtggtgcacggtcaccaagtgttcgggaggccatgatgatgccacccttgcc
cgcctgcagaaggaactggacatggtgaagatcagcaaggatcccagcaagatacccagc
tggctgaaaatcaacaagacctactatcctgacttcatagtcccagacccaaagaaagct
gccgtgtgggagatcacaggggctgagttctccaagtctgaggctcacacagccgacggg
atctccatccggttcccacgttgcacccgcatccgtgacgataaggactggaaatctgcc
actaacctcccccaactcaaggaactgtaccagctgtccaaggagagggcagacttcact
gtggcggctggagaggaggggagctccaccacagggggcagcagcggagagaacgagggt
acctcggggcctgcgggggctcgcaaggcctccagggcctccccgaagcagccctccacc
agtgccaagaaggcaggagggaggctgagcagccccaaccgcagaggcggccaccagccg
actgtgaaagtggggcagaagcggaaggctcccgctgagaccccgtgcccagcaaaggtg
ctgctggacatctttactggggtgcggctctacctgccaccctccacaccagacttcagc
cgtctcagacgctattttgtggcattcgatggggacctggtgcaggagtttgacatggcc
tcagccacacacgtgctgggtagcagggacaagaaccctgaggcccagcaggtctccccg
gagtggatttgggcgtgtatccggaaacgaaggctggtagccccatgctag

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