Ailuropoda melanoleuca (giant panda): 100470130
Help
Entry
100470130 CDS
T01329
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100470130 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aml03021
]
100470130 (PCF11)
03019 Messenger RNA biogenesis [BR:
aml03019
]
100470130 (PCF11)
Transcription machinery [BR:
aml03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100470130 (PCF11)
Messenger RNA biogenesis [BR:
aml03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100470130 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
SelA
Motif
Other DBs
NCBI-GeneID:
100470130
NCBI-ProteinID:
XP_002925437
Ensembl:
ENSAMEG00000005241
LinkDB
All DBs
Position
8:complement(46448038..46470548)
Genome browser
AA seq
1554 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGSGSVPSKLHVPQIPPMAVKPPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDTKTSKTVPSEKLNSSKQEKSKSGEKTKKELDQL
DSKSKSKSKSPSPLKNKLSHTKDLKNQESESARVSEMSKRDPRLKKHLQDKTDSKDDDVK
EKRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRS
RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTLPSRE
ERNAKRSNKQDIRDPRRIKKTEEERPQEAANQHSTKSGTEPKENVENWQSSKSTKRWKSG
WEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLASK
RELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYEDS
DKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMIFEGPNKLSPRID
GPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGSGCPLRFEGPPGPVGTPLRFEGPIGQA
GGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGG
LRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQQGVGMRFEGPHG
QSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIE
GPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRFDGPPGQQ
VQPRFDGVPQRFDGPQHQQASRFDIPLGLQSTRFDNHPSQRLESVSFNQTGPYSDPPGNA
FNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQFGN
FGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQNPSGALPKAYPD
NHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPPEEEEDQTEDQDVPDLTNF
TIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTH
RRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVE
SCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVEN
PLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPTEIKTENDTVESV
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgttcc
acatgggatgaaatatttcctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgccggaagagccttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggttctggatctgtaccatccaaattacatgttccacaa
attccccctatggcagttaaacctccccatcaggttcctgtgcaacctgagaaaagccgt
ccaggtccatccttacaaattcaggatttgaaaggaactaatcgggatccccgtcttaat
aggatgagtcaacattcttcacatggaaaagatcagagtcacaggaaggaattcctaatg
aacacattgaaccaatctgatactaagacaagtaaaactgtaccctctgaaaaactaaac
tcatctaagcaagagaaaagtaaatcaggtgaaaaaaccaagaaagaacttgaccaatta
gattctaaatctaaatctaaatctaaatcaccatcacctctgaaaaacaaattatcccac
acaaaagacttgaaaaatcaagaatctgaaagtgcaagggtgtctgaaatgagcaagaga
gatccaaggttgaaaaaacatcttcaggataagacggatagcaaagatgatgatgtaaaa
gagaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaaatcatctgaacac
agactggttggaagtagaaataaaatcatcaatggcattgtacaaaagcaggatacaata
acggaagaatcagaaaaacaagggacaaaaccagggagatcaagtactagaaagcgatca
agatcgagatcacccaagtctcggtcaccaattatacattctccgaagagaagagatagg
cggtcacccaaacgaaggcaaaggagtatgtctccaacttcgacgcccaaagctggaaag
attcggcaatcaggagttaagcagtcacatatggaagagtttacgctaccttccagggaa
gagcgaaatgctaagagaagtaataaacaagatattcgagatccaaggcgaataaaaaag
actgaggaggaacgaccacaagaagctgcaaatcagcattctacaaaatcaggcactgaa
ccaaaggagaatgtagaaaattggcaaagttccaagtctaccaaaagatggaaatctggt
tgggaagaaaataaaagcttacaacagggtgatgaacatagtaaatctcctcatctaagg
catagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcagcag
catcgattaagtgtagatgccaaccttcagattcctaaagagttaactcttgcaagcaaa
agagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggatgag
ttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtgtacgagaa
gagcagagatcaccgttcaatgatcgttttccacttaagcgacctagatatgaagattca
gataaaccatttgtagatagcccagcatcaagatttgccggccttgatacaaatcagcga
cttacagctttagctgaagatagaccattatttgatggacctagtaggccatcagtaaca
agagatggcccaaccaagatgatttttgaaggacctaataaattaagccctagaattgat
ggacctcctacaccaggttctcttcggtttgatgggtcaccaggacaaatggggggaggt
ggccctttgagatttgaaggaccacaaggtcagctaggaagtgggtgtcctttgagattt
gaaggtcctccaggaccagtagggacacctctgcggtttgaggggccgattggtcaagca
ggaggaggtggttttcggtttgaaggttcccctggtctgaggtttgagggatctgcaggt
ggtttgcgatttgaaggaccagggggccagcctgtgggtggtctcaggtttgagggacat
cggggtcaacctgtgggtggtctaaggtttgagggacctcatggtcagcctgtgggtgga
cttagatttgataatccccgaggtcagcctgtcggtggacttagatttgaagggggtcat
ggtccatcaggggctgcaattaggtttgatggacctcatggtcagccagcaggtgggatc
agatttgagggacctttgctacagcagggagttggaatgaggtttgagggcccccatggt
cagtcagtagccggtttgaggtttgaaggacaacataatcaacttggtgggaaccttagg
tttgagggtccacatggtcagccaggggttgggatcaggtttgaaggacctttagtccaa
caaggaggtggaatgaggtttgagggtccttctgtgccaggaggtggcctgagaattgaa
gggcctctgggtcaaggtggtccaaggtttgaaggttgtcatgctttaaggtttgatggg
cagccaggtcagccatctctcttgccaagatttgatggattacatgggcagccaggtcct
agatttgaaagaactggtcagccaggcccacagagatttgatgggccacctggacagcag
gttcaaccaagatttgatggtgtacctcaaagatttgatggtccacaacaccagcaagca
tcaagatttgatattcctcttggtcttcaaagcacacgatttgacaatcatccttcacag
aggcttgaatcagtatctttcaatcagactggtccatatagtgatccacctggcaatgct
tttaatgccccatcccaaggactacagttccaaagacatgaacaaatgtttgattcacct
caaggaccaaattttaatggaccacatggccctggaaaccagagcttctccaatcccctt
aacagagcttctggacactattttgatgaaaagaatcttcagagttcccaatttggaaac
ttcggcaatctacctgctccaataacagtaggaaatattcaggcatctcaacaggttctt
actggtgttgctcagccggtagcatttggccaaggacaacagtttttgccggttcatcca
caaaatcctggagcatttgttcagaatccttcaggagctcttcctaaggcatatcctgat
aatcatctcagtcaggtggatgtaaatgaattattttcaaaactgctaaaaacaggaatt
ctcaaattgtctcagcccgattcagctacaactcaagtaaatgaagttgctgctcagcct
ccccctgaagaggaggaagatcaaactgaagatcaagatgttccagatcttaccaatttt
acaattgaagaattgaaacaacgttatgatagtgttataaatcgactgtacactggtatt
cagtgttactcctgtggaatgaggtttacaacatcacagacagatgtatacgcagatcac
ttggactggcattatcggcaaaatagaactgaaaaagatgttagcagaaaagtcacgcat
agacgttggtactacagtttaacggactggatagaatttgaggaaatagctgatttggaa
gaacgtgcaaagagccagttttttgaaaaggtgcatgaagaagttgtgctcaagactcag
gaggctgctaaagaaaaggagttccaaagtgtacctgctggaccagctggagcagttgag
agttgtgaaatctgtcaagaacaatttgaacaatactgggatgaagaagaggaggaatgg
catttgaaaaatgctattagagtagatggaaagatttatcatccgtcgtgttatgaagat
tatcaaaatacatcttcatttgattgtacaccatctcccagcaagacaccagttgaaaac
cctttgaacattatgttgaacattgtcaaaaacgaattgcaggaaccctgtgaaagtccc
aaagttaaggaagaacgaattgataccccaccagcttgtacagaggaaagcatagcaaca
cccactgaaattaaaacagaaaatgatacagtcgagtcagtttaa
DBGET
integrated database retrieval system
