KEGG   Ailuropoda melanoleuca (giant panda): 100471432
Entry
100471432         CDS       T01329                                 

Gene name
POLB
Definition
(RefSeq) DNA polymerase beta
  KO
K02330  DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
Organism
aml  Ailuropoda melanoleuca (giant panda)
Pathway
aml03410  Base excision repair
aml05166  Human T-cell leukemia virus 1 infection
aml05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:aml00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    100471432 (POLB)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    100471432 (POLB)
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    100471432 (POLB)
Enzymes [BR:aml01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     100471432 (POLB)
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.-  
     100471432 (POLB)
DNA repair and recombination proteins [BR:aml03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     100471432 (POLB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    X-family DNA polymerases
     100471432 (POLB)
SSDB
Motif
Pfam: DNA_pol_B_palm DNA_pol_lambd_f HHH_8 DNA_pol_B_thumb HHH_5 Cdd1 HHH HHH_2
Other DBs
NCBI-GeneID: 100471432
NCBI-ProteinID: XP_034503448
Ensembl: ENSAMEG00000005134
LinkDB
Position
18
AA seq 335 aa
MSKRKAPQETLNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
TLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS
FRRGAESSGDMDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTLSKGDTKFMGVCQ
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP
LGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgagcaaacggaaagcgccgcaggagacgctcaacgggggaatcaccgacatgctcaca
gaactcgcaaactttgagaagaacgtgaaccaggcaatccacaagtacaatgcttacaga
aaagcagcgtctgtgatagcaaagtacccacacaaaataaagagtggagcagaagctaag
aaattgcctggagtaggaacaaaaattgctgaaaagattgatgaatttttagcaactgga
aaattgcgtaagctggaaaagattcggcaggatgacacgagttcatctatcaattttctg
actcgagttagtggcattggtccatctgctgcaaggaagtttgtagatgaaggaattaaa
acattagaagatctcagaaaaaatgaagataagttgaaccatcatcagcgaattgggttg
aaatattttgaggactttgagaaaagaattcctcgtgaagagatgttacaaatgcaagat
attgtactaaatgaagttaaaaaagtggattctgaatacattgctacagtctgtggcagt
ttcagaagaggtgcagagtccagtggagacatggatgttcttctgacccatccaagcttt
acctctgaatcaaccaaacagccaaagctgttacatcgtgttgtggaacagttacagaag
gtccattttattacggatactctgtcaaaaggtgacacaaaattcatgggtgtttgccag
cttcccagtaaaaatgatgaaaaggagtatccacacaggagaattgatataaggttgata
cccaaggatcagtattactgtggtgttctctatttcaccgggagtgatattttcaataag
aatatgagagctcatgccctagaaaagggcttcacaatcaatgagtacacaatccgtccc
ttgggagtcactggagtcgctggagagcctctgccggtggatagtgagaaagacatcttt
gactatatccagtggaaataccgagaacccaaggaccggagtgaatga

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