KEGG   Ailuropoda melanoleuca (giant panda): 100482586Help
Entry
100482586         CDS       T01329                                 

Gene name
LIG1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
aml  Ailuropoda melanoleuca (giant panda)
Pathway
aml03030  DNA replication
aml03410  Base excision repair
aml03420  Nucleotide excision repair
aml03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aml00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100482586 (LIG1)
   03410 Base excision repair
    100482586 (LIG1)
   03420 Nucleotide excision repair
    100482586 (LIG1)
   03430 Mismatch repair
    100482586 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aml03032]
    100482586 (LIG1)
   03400 DNA repair and recombination proteins [BR:aml03400]
    100482586 (LIG1)
Enzymes [BR:aml01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100482586 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     100482586 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     100482586 (LIG1)
DNA replication proteins [BR:aml03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    100482586 (LIG1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     100482586 (LIG1)
DNA repair and recombination proteins [BR:aml03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     100482586 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     100482586 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     100482586 (LIG1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR PucR
Motif
Other DBs
NCBI-GeneID: 100482586
NCBI-ProteinID: XP_019653811
Ensembl: ENSAMEG00000015091
LinkDB All DBs
Position
Un
AA seq 912 aa AA seqDB search
MQRSIMSFFYPKKEGKVKKPEKETSNSVRETEPPPKVALKERNGEVPESDSPVKRPGRKV
ARVLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPATFPESSPSLSNTSPVDISPAGIPK
RRTARKQLPKRTIQDVLGEQGRDEDREAKRKKEEEAETPPESLTEPEVTQKKEAEGDQPA
TPPETSPAEPPPDGASEPEVAEKQEAREENPAKPPARAPKPVSSFFAPRKPATKKEGKEE
GPGTARQEETKGPLDPSSYNPAKSNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSARLR
MVETLSNLLRSVVALSPPDLVPVLYLSLSRLGPPQQGLELGVGDGVLLKAVAQATGRQLE
SVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFTKFRDIARLAGSASTAKKMDVI
KGLFVACRHSEARYIARALSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAVVDAGKGR
TAEARKTWLEEQAMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGVPLKPMLAHP
TRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPK
IKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNG
ESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVKTL
DVNATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEES
EELQAICKLGTGFSDEELEEHHRKLQALVLPTPRPYVRADGAVAPDHWLDPSAVWEVKCA
DLSLSPIYPAARGLVDGEKGISLRFPRFIRIREDKKPEEATTSAQVASLYRKQSQIQNQQ
GADLDSDSEDFY
NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgtagtatcatgtcatttttctaccccaagaaggagggcaaagtgaaaaaacca
gagaaggagacctccaacagcgtcagagagacggaaccacctccaaaggtagcactgaag
gagcggaatggggaggtgcccgagagtgattctccagtgaagaggccagggcgcaaggtg
gcccgggtcctgggcagtgaaggggaggaggaagatgaagccctcacgccctccaaaggc
cagaagcctgccccgggctctccacaagtctcccctcccagccctgccacatttcccgag
agcagcccttccctctccaacacctctcctgtggacatctccccagcagggatccccaag
cggcgcacagctcggaagcagcttcctaagcggacaatacaggatgtcctgggggagcag
ggcagggacgaggacagagaggccaagaggaagaaggaggaagaagctgagaccccaccg
gaaagcctcacagagcctgaagtgacccagaagaaagaagcagaaggggaccagcccgcg
acgccccctgagacctccccagcagagcccccaccagacggcgcctcggagcctgaggtg
gccgagaagcaggaggctcgggaggagaacccagccaagccgcccgccagagctcctaag
ccggtcagcagcttcttcgccccccggaaaccggcaaccaagaaagaagggaaagaggag
ggacctggcacggcaagacaggaggagaccaagggacccctggacccctccagctacaat
cctgccaagagcaattaccatcccatcgatgatgcatgctggaagccaggccagaaggtc
ccttacctggctgtggcccggacatttgagaagattgaggaagtttctgctcggctccgg
atggtggagacgctgagcaacttgctgcgttctgtggtggccctgtcgcctcccgacctc
gtcccggtcctctacctcagcctcagccgcctcgggccaccccagcagggcctggagctt
ggcgtcggtgacggcgtcctgctcaaggccgtggcccaggccacggggcggcagctggag
tctgtcaaggccgaggcagccgagaagggcgacgtggggctggtggccgagaacagccgc
agcacccagagactcatgctgcccccgcctgcgctcaccgctgccggtgtcttcaccaag
ttccgagacatcgcccggctggccggcagcgcttccacagccaagaagatggacgtcatc
aaaggcctctttgtcgcctgccgtcactcggaagcccgatacatcgccagagccctgagt
ggacggctgcgcctcgggctggcagagcagtcggtgctggccgccctctcccaggccgtg
agcctcacgcccccaggccaagaattccctccggccgtcgtggatgctgggaagggcagg
acagcagaggcccgaaagacgtggctggaggagcaagccatgatcctgaagcagacattc
tgcgaggtgcccgacctggaccggatcatccccgtgctgctggagcacggcctggagcgc
ctcccggagcactgcaagctgagcccaggggttcccctgaaaccgatgctggcacacccc
acgcggggtgtcagcgaggtcctgaaacgcttcgaggaggcagctttcacctgcgagtac
aaatacgacgggcagagggcgcagatccacgtcctggaaggcggggaggtgaagatcttc
agcaggaatcaggaagacaatactggaaagtacccggacatcatcagccgcatccccaag
attaaactcccgtcggtcacatccttcatcctagacacagaagccgtggcttgggaccgg
gaaaagaagcagatccagccattccaagtgctcaccacccgcaaacgcaaggaggtggac
gcggcagagatccaggtgcaggtgtgtctgtatgccttcgacctcatctacctcaatgga
gagtccctggtgcgtgagccgctttcccgacgccggcagctgctccgggagaatttcgtg
gagacggagggcgagtttgtcttcgccacctccctggacaccaaggacacagaccagatt
gccgagttcttggagcagtctgtgaaagactcctgcgaggggctcatggtgaaaaccctg
gacgtcaatgccacctatgagattgccaagagatcacacaactggctcaagctgaagaag
gactacctcgatggcgtgggtgacaccctggacctcgtggtgatcggcgcctacctgggc
cgtggcaagcgggccggccgctacgggggcttcctgctggccgcctacgacgaggagagt
gaggagctccaggccatatgcaagctcggaactggcttcagtgacgaggagctggaagag
catcaccggaagctgcaggccctggtgctacccaccccacgcccctacgtccgggcagat
ggggctgtggcccccgaccactggctggaccccagcgccgtgtgggaggtgaaatgtgcc
gatctctccctgtcccccatctaccctgctgcccgcggcctggtggatggtgagaagggg
atctcccttcgcttccctcggtttatccgcatccgtgaagacaagaagccggaggaggcc
accaccagtgcccaggtggcctcgctgtacaggaagcagagtcagattcaaaaccagcag
ggcgcggacttggactccgactcggaagatttctactag

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