Amycolatopsis mediterranei S699: RAM_10970
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Entry
RAM_10970 CDS
T01822
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
amn
Amycolatopsis mediterranei S699
Pathway
amn03030
DNA replication
amn03430
Mismatch repair
amn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RAM_10970 (dnaE)
03430 Mismatch repair
RAM_10970 (dnaE)
03440 Homologous recombination
RAM_10970 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amn03032
]
RAM_10970 (dnaE)
03400 DNA repair and recombination proteins [BR:
amn03400
]
RAM_10970 (dnaE)
Enzymes [BR:
amn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RAM_10970 (dnaE)
DNA replication proteins [BR:
amn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RAM_10970 (dnaE)
DNA repair and recombination proteins [BR:
amn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RAM_10970 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AEK40684
UniProt:
A0A9R0NU40
LinkDB
All DBs
Position
2300189..2303776
Genome browser
AA seq
1195 aa
AA seq
DB search
MSNDSFVHLHVHTEYSMLDGAAKIAPLFAEAARLGMPAVGMTDHGNMYGGDEFYQQSKKH
GLKPIIGIEAYIAPESRFHKKPVFWGQSNQRGSDELGEGGDVSGAGAYTHMTMLAQNATG
LRNLFKLSSLASMQGYYRKPRMDRELIAENHSGIIATTGCPSGEVQTRLRLGQKEAAIQA
ASDYKDIFGADNFFLELMDHGLPIERSVREGLLEVGRLLDLKPIATNDSHYVTKDQADTH
SALLCVQAGKTLNDPTRFKFDGDGYYLKSAAEMREYWDKEVPGAADTTLMIAERVESYED
VYSHKDRLPFFEVPEGYDQGGWLREEVQRGLKWRFPDGVPDEYYNERIEIELDVIIGKGF
PAYFLIVADLISYARKVGIRVGPGRGSAAGSLVAYVLGITNLDPIPQKLLFERFLNPERV
SMPDIDIDFDDRRRGEMIRYATDKYGSDKVAQVITFGTIKTKAAIKDSARVHFGQPGYAI
ADKISKALPPPIMAKDIPLSGIVDNKHERYGEAAEVRALVETDDECKTIFETARGLEGLI
RNAGVHACAVIMSCDPLTDAIPLWQRDDGSIITGWDYPSCEAIGLLKMDFLGLRNLTVIG
DAIDNIKANRGVDVDLDTLGVDDPETYKLLARGDTLGVFQLDGGPMRDLLRRMEPTVFDD
IVAVGALYRPGPMGMNAHNDYADRKNNRQKVKPIHPELDEPLREILADTYGLIVYQEQIM
HIGQKVAGYTMGRADVLRRAMGKKKKEVLDKEYEGFEAGMRASDLRPGGFSPEAIKALWD
TILPFAGYAFNKSHAAAYGLISYWTAYLKANFRAEYMAALLTSVGDNKDKSAVYLSECRR
LGIKVLPPDVNESALRFAAVGDDIRFGLGAVRNVGANVVESIIKTREEKGKYASFTDFLD
KSELVACNKRVIESLIKAGGFDSLGHTRLSMIQVHEDAVEAVVPLKRQEAMGQFDLFGFG
GDEGEAAPSSSPLAHLKFGEEEYPRKQLLAYEREMLGLYVSAHPLDGAERILRKHAPKPI
ASILNDPPKEGELVISGLITSLERRVNKKGEPWAICTVEDMDASLEVLFFPKSYALFAGE
LIEDNAVLVKGRVNWREDKMSIFGGGLATLDLSEVGTGNGDDEPPLVLLAAAEKIDQAVV
SELRSTLLAHKGETPVHLKLVGKNQTVFALYDYPVKVSSMLIGELKGIRGITAST
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaacgattctttcgtccacctgcacgtccacaccgagtactcgatgctcgacggt
gcggcgaagatcgctcccctcttcgcggaggcggcgcgcctcggcatgcccgcggtcggc
atgaccgaccacggcaacatgtacggcggcgacgagttctaccagcagtcgaagaagcac
ggcctcaagccgatcatcgggatcgaggcgtacatcgcgccggagtcgcggttccacaag
aagccggtcttctggggccagtcgaaccagcgcggctccgacgagctgggcgagggcggc
gacgtctcgggcgcgggcgcgtacacccacatgacgatgctcgcgcagaacgccaccggg
ctgcggaacctcttcaagctgtcctcgctggccagcatgcagggctactaccgcaagccc
cggatggaccgcgagctgatcgccgagaaccactccgggatcatcgcgaccaccggctgc
ccgtccggcgaggtgcagacccggctgcggctgggccagaaggaagctgcgatccaggcc
gcgtccgactacaaggacatcttcggcgccgacaacttcttcctcgagctgatggaccac
ggcctgccgatcgagcggtcggtccgcgagggcctgctggaggtcggccgcctgctcgac
ctcaagccgatcgccaccaacgactcgcactacgtcaccaaggaccaggcggacacgcac
tcggcgctgctgtgcgtccaggccggcaagaccctcaacgacccgactcggttcaagttc
gacggcgacggctactacctcaagtccgccgccgagatgcgcgagtactgggacaaggag
gtccccggcgcggccgacacgacgctgatgatcgccgagcgcgtcgagtcctacgaagac
gtctactcgcacaaggaccggctgccgttcttcgaggtgccggaggggtacgaccagggc
ggctggctgcgcgaagaggtccagcgcgggctcaagtggcgcttcccggacggcgtgccg
gacgagtactacaacgagcgcatcgagatcgagctcgacgtcatcatcgggaagggcttc
ccggcctacttcctgatcgtcgccgacctcatcagctacgcccgcaaggtcggcatccgg
gtcggcccgggccgtggttcggccgccggttcgctggtcgcgtacgtcctgggtatcacg
aacctggatccgatcccgcagaagctgctgttcgagcggttcctgaaccccgagcgcgtc
tcgatgcccgacatcgacatcgacttcgacgaccgccgtcgtggcgagatgatccggtac
gcgaccgacaagtacggctcggacaaggtcgcccaggtcatcaccttcggcacgatcaag
acgaaggcggcgatcaaggactccgcccgggtgcacttcggccagccgggctacgcgatc
gcggacaagatctccaaggcgctgccgccgccgatcatggcgaaggacatcccgctctcg
ggcatcgtcgacaacaagcacgagcgctacggcgaggccgccgaggtccgcgcgctcgtc
gagaccgacgacgagtgcaagacgatcttcgagaccgcccgcggccttgagggcctgatc
cgcaacgccggcgtgcacgcctgcgcggtcatcatgtcctgcgacccgctgaccgacgcg
atcccgctgtggcagcgggacgacggctcgatcatcaccggctgggactacccgtcgtgc
gaggccatcggcctgctgaagatggacttcctcggcctgcgcaacctcaccgtcatcggt
gacgcgatcgacaacatcaaggccaaccgcggggtcgacgtcgacctcgacaccctcggc
gtcgacgaccccgagacgtacaagctgctcgcccgcggtgacacgctcggcgtgttccag
ctggacggcggccccatgcgcgacctgctgcggcgcatggagcccacggtgttcgacgac
atcgtcgcggtcggcgcgctgtaccgccccggcccgatgggcatgaacgcgcacaacgac
tacgccgaccgcaagaacaaccggcagaaggtcaagccgatccacccggagctcgacgag
ccgctgcgggagatcctggccgacacctacggcctgatcgtgtaccaagagcagatcatg
cacatcggccagaaggtggccgggtacacgatggggcgcgcggacgtgctccgccgcgcg
atgggcaagaagaagaaggaagtcctcgacaaggaatacgagggcttcgaggccggcatg
cgggccagtgacctgcggcccggcggcttctcgcccgaggcgatcaaggcgctctgggac
acgatcctcccgttcgccgggtacgcgttcaacaagagccacgcggccgcgtacggcctg
atctcgtactggaccgcctacctcaaggcgaacttccgggccgagtacatggccgccctg
ctcacgtcggtcggcgacaacaaggacaagtcggcggtctacctgtccgagtgccgccgg
ctcggcatcaaggtgctgccgccggacgtcaacgaatcggccctgcgcttcgcggccgtc
ggggacgacatccgcttcggcctcggcgcggtccgcaacgtcggcgcgaacgtcgtcgag
tcgatcatcaagacccgcgaggagaagggcaagtacgcctccttcaccgacttcctcgac
aagtccgagctcgtggcctgcaacaagcgggtcatcgagtcgctgatcaaggcgggcggg
ttcgactcactcggccacacgcggctgtcgatgatccaggtccacgaggacgcggtcgaa
gccgtcgtcccgctcaagcgccaggaggcgatgggccagttcgacctgttcggcttcggc
ggcgacgagggggaggcggcgccctcgtcgtccccgctcgcgcacctgaagttcggcgag
gaggagtacccgcgcaagcagctgctcgcctacgagcgcgagatgctcggcctgtacgtc
tcggcgcacccgctggacggcgccgagcggatcctgcgcaaacacgccccgaagccgatc
gcgagcatcctcaacgatccgccgaaggaaggcgagctggtgatctccgggctgatcacc
tcgctcgagcggcgggtcaacaagaagggcgagccctgggcgatctgcacggtcgaggac
atggacgcctcgctcgaggtgctgttcttcccgaagtcgtacgcgctgttcgccggtgag
ctgatcgaggacaacgcggtcctggtcaagggccgggtcaactggcgcgaagacaagatg
tcgatcttcggcggcggcctggccacgctcgacctgtccgaggtcggcaccggcaacggc
gacgacgagccgccgctggtgctgctcgcggcggcggagaagatcgaccaggcggtggtg
agcgagctgcggtccacgctgctggcccacaagggcgagaccccggtgcacctcaagctg
gtgggcaagaaccagacggtcttcgcgctgtacgactacccggtcaaggtcagctccatg
ctgatcggcgagctcaagggcatccggggcatcaccgcctctacgtga
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