Pelagerythrobacter marensis: AM2010_1322
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Entry
AM2010_1322 CDS
T03951
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amx
Pelagerythrobacter marensis
Pathway
amx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AM2010_1322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amx03019
]
AM2010_1322
03009 Ribosome biogenesis [BR:
amx03009
]
AM2010_1322
Enzymes [BR:
amx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AM2010_1322
Messenger RNA biogenesis [BR:
amx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AM2010_1322
Ribosome biogenesis [BR:
amx03009
]
Prokaryotic type
rRNA processing factors
AM2010_1322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AKM07395
UniProt:
A0A0G3X762
LinkDB
All DBs
Position
1389427..1392237
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AA seq
936 aa
AA seq
DB search
MATRMLIDARHPEETRVAVLKGNRIEEFDFESAEHRQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPREDREQLLAEEAEAAEEEARLRAEEEERGDLPGDEYDA
DDETGGALVEEFAEDGVEEIDTSEKDKVATFEEGQLANGDSDDDDDDDDSDDDGDENRGG
SDSRRGRRGRGRRQSKGRPRAKEVDEVRARRQALRRRYKIQDVIQRRQVLLVQVVKEERG
NKGAALTTYLSLAGRYTVLMPNSSHGGGISRKISSASDRKRLKQIVGDLKLPRTMGLIVR
TAGLQRTKTEIKRDFDYLARLWDEIREKTLSSSAPTLIHSDSDLIKRAIRDIYNREIEEV
VVEGEPGYRSAKEFMKLLMPSHARRVKAYSDPVPLFQRYGAEDQLRAMYDPVVQLKSGGY
LVINPTEALVSIDINSGRSTKEHGIEQTALATNLEAAKEIARQLRLRDMAGLVVIDFIDM
EYNSNNRKVERALKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEATTRECPHCDGT
GLVRTASSAGLSALRLIEDEAAKGKGTVITLAASTEAAVYLLNSKRDDLVEIERRYGVNV
EVVPEGEEEGAKMSVSSSGPKPTEAPKFEPIVDEEEPEAEEIEADTDDRGDDEDDDGNKK
RRRRRRGGRGRNKSRNGDDSSENAEDDSDDSDEERDDSQSSGEDEGRPKKRRRRGGRRRR
GGRDREDGESEGDGDNGQAADGGDAAEAVAERVSEDMAVAPAPDGESASPDGTEEQASEE
APKPKRRTRRAKTAEEPAEAPARKPRASRAKAKPAAEPANEAAEAPPAEADAEEAPKPKK
RTRRKKADEPAAAEAAPAESEQPPEKPKRTRRKKKVEEEPTTEAAAPAQPSGDTAEEAVA
EAPAAANDATPADTQDGKDEKSGSPRRGWWQRTFGQ
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgctgatcgatgcgcgccacccggaagaaacacgggtggcggtcctc
aaaggcaaccggattgaagaattcgatttcgaatccgccgaacatcggcagatcaaaggc
aacatctatctcgccaaggtaacgcgggtcgaacccagccttcaggctgcgtttgtcgat
ttcgggggtaaccggcacggtttcctcgccttcagcgaaattcatcccgactactatcag
atcccgcgcgaagaccgcgagcagttgctggcggaagaagccgaagcggctgaagaagaa
gcgcgcctgcgcgccgaggaagaagagcgcggcgacctgccgggcgacgaatacgacgcc
gacgacgaaacgggcggcgcgctggtcgaggaattcgcggaagacggtgtcgaggaaatc
gacacttccgagaaagacaaagtcgccacgttcgaagaaggtcagctcgccaacggcgat
agcgacgacgacgatgatgatgacgacagcgacgatgacggcgacgaaaaccggggcgga
tcggattcgcgccgtggccgccgcgggcgtggtcgccgccagtcgaaggggcgcccccgc
gccaaggaagtggacgaagtccgcgcccggcgtcaggccctgcgccgccggtacaagatt
caggacgtgatccagcgccggcaggttctgctggtccaggtggtcaaggaagaacgcggc
aacaagggtgcggcactgaccacttatctcagcctggccggccgctacaccgtcctgatg
cccaacagcagccacggcggcggtatttcgcgcaagatttccagcgccagcgatcgcaag
cggctgaagcagatcgtgggcgacctgaagcttccccgcacgatgggcctgatcgtccgc
accgccggcctccagcgcaccaagaccgagatcaaacgcgatttcgactatctcgcccgc
ctgtgggacgagattcgcgagaagacgctttcttccagcgcgcccacgctgatccattcg
gacagcgacctgatcaagcgcgccattcgcgacatctacaatcgcgagatcgaggaagtc
gtggtcgagggtgaaccggggtatcgctcggccaaggaattcatgaaactgctgatgccc
agccacgcgcgccgggtgaaagcctattccgaccccgtcccgttgttccagcgctatggt
gcggaagatcagctgcgggcgatgtacgaccccgtcgtccagttgaagagcggcggctat
ctggtcatcaacccgaccgaagcgctggtatcgatcgacatcaactccggccgttcgacc
aaggaacacggtatcgagcagacagcgctggcgaccaacctggaagctgcgaaggaaatc
gcgcgccagttgcgcctgcgcgatatggcaggcctggtcgtgatcgacttcatcgacatg
gagtacaactccaacaaccgtaaggtcgaacgcgcgctgaaagacgcgttgaaaaacgac
cgcgcgcgcatccaggtcggccgcatttcgggcttcggcctgatggaaatgagccggcag
cgcctgcgtaccggcgtgctggaagcaaccacccgcgaatgcccgcattgcgacggcacc
gggctggtccgcaccgcatccagcgccggcctgtccgcactgcggctgatcgaggacgag
gccgccaagggcaagggcaccgtgatcacactcgcggcaagcacagaggccgccgtctac
ctcctcaactccaagcgcgacgatctggtggagatcgagcgccgctatggcgtaaacgtc
gaagtcgtgccggaaggcgaggaagaaggcgcgaagatgagcgtctccagctcaggcccg
aaacccaccgaggcgccgaagttcgagccgatcgtcgatgaggaagagccggaagcggag
gaaatcgaagccgataccgatgatcgcggcgacgatgaggacgacgacggcaacaagaag
cggcgccggcgccggcgcggtggacgtggccggaacaagagccgaaatggcgacgattcg
tccgaaaacgccgaagatgacagcgacgatagcgacgaggaacgcgacgacagccagtcc
tcgggcgaagacgaaggcaggccgaaaaagcgccgccgccgcggcggacgccgcaggcgc
ggaggtcgtgatcgcgaggatggcgagagcgaaggcgatggcgacaacggtcaagctgcc
gatggtggcgatgcagccgaggcagtcgctgagcgtgtaagcgaagacatggcagtcgcg
ccggctcccgatggggagagcgcatccccggacggaaccgaagagcaggcgagcgaggaa
gctccgaagccgaagcggcgcacgcgccgggcaaaaacggccgaagaacctgcagaagct
cccgcccgcaagccgcgcgcctcccgggcgaaggcgaagcctgccgcagagcctgcaaac
gaagcagccgaagcgccgcctgccgaggctgatgctgaggaagctccgaagccgaagaag
cgcacccggcgcaagaaggcggacgaaccggcagcagccgaagccgccccagccgaaagc
gagcaaccgcccgaaaagccgaagcgcacccggcgcaagaagaaggttgaggaagaaccc
acgaccgaagcggctgctcctgcgcaaccttccggcgacactgcggaagaagccgtcgcg
gaagcgcccgctgccgcaaatgacgcaacacccgcggatacgcaggacgggaaggacgag
aagtccggctccccccgccgcggctggtggcaacgtacgtttggccaatag
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