KEGG   Amycolatopsis sp. BJA-103: BKN51_01540Help
Entry
BKN51_01540       CDS       T05296                                 

Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
amyb  Amycolatopsis sp. BJA-103
Pathway
amyb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:amyb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BKN51_01540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amyb03400]
    BKN51_01540
Enzymes [BR:amyb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BKN51_01540
DNA repair and recombination proteins [BR:amyb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BKN51_01540
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase Read-through DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AUI57018
UniProt: A0A2N8MMF7
LinkDB All DBs
Position
complement(317944..318900)
Genome map
AA seq 318 aa AA seqDB search
MSTVPDAIAPMLATDGDLPTGGWGYEYKWDGYRCCLRVARDGETRLTSRRGLDITATYPD
VTGEALDGREAVLDGEIVVLDDQGRPSFPLLQTRHLRTPDASLLERSPVHFFAFDVLIID
GTVLLDEPYAARRELLTSLGGGGRMVIPPGYTDDDISPDQLLEVVRQHGLEGLIAKKLDS
RYYPGKRTRQWIKRALWHSQEVVIGGWRPGEGRRSGTLGALLLGAHDESGGLRYVGDVGT
GFSDKVLEDLHARLTPLERKTPPFTSEVPRDRARRVHWVAPELVGEVVHRNWTPDGRLRH
TTWRGLRADKTPEDVKVP
NT seq 957 nt NT seq  +upstreamnt  +downstreamnt
atgagtaccgtgccggacgcgatcgccccgatgctggcgaccgacggcgacctgcccacc
ggcgggtgggggtacgaatacaaatgggacggctaccgctgctgcctgcgcgtcgcccgc
gacggcgagacgcgcctgaccagccgtcgcggcctcgacatcacggcgacgtaccccgac
gtgaccggcgaagccctcgatggccgcgaagccgtcctcgacggcgagatcgtcgtcctc
gacgaccagggacggccgagcttcccactgctgcaaacgcggcatctgcgtacgccggac
gcgtcgctgctggagcgcagcccggtgcactttttcgcctttgacgtgctgattatcgac
gggaccgtcctgctcgacgagccctacgccgcccgtcgcgaactcctgacgtccctgggt
ggcggcggccgcatggtcatcccaccgggttacaccgacgacgacatctcgcctgaccag
ctgctcgaggtcgtccgacagcacgggctcgaggggctgatcgcgaagaagctcgacagc
cggtattacccaggcaagcggaccaggcagtggatcaagcgcgcgctgtggcacagccag
gaggtcgtgatcggcggctggcgccccggcgagggacggcgctcgggaacgctcggcgcg
ctgctgctgggcgcgcacgacgagtccggcggactgcggtacgtcggcgatgtcgggacc
gggttcagcgacaaggtcctcgaagacctgcatgcccggctcaccccgctggagcggaag
acaccgcctttcacctcggaggtcccgcgcgatcgggcgcggcgggtgcactgggtggcg
ccggagctcgtcggggaggtcgtccaccggaactggaccccggacggacggctgcggcac
acgacctggcggggactgcgggcggacaagactcccgaggacgtcaaggtgccttga

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