Amycolatopsis sp. AA4: CU254_05040
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Entry
CU254_05040 CDS
T05278
Name
(GenBank) DNA topoisomerase
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
amyc
Amycolatopsis sp. AA4
Brite
KEGG Orthology (KO) [BR:
amyc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amyc03032
]
CU254_05040
03400 DNA repair and recombination proteins [BR:
amyc03400
]
CU254_05040
Enzymes [BR:
amyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
CU254_05040
DNA replication proteins [BR:
amyc03032
]
Prokaryotic type
DNA Topoisomerases
CU254_05040
DNA repair and recombination proteins [BR:
amyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CU254_05040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
LAGLIDADG_3
DNA_gyraseA_C
Hint_2
Intein_splicing
Hom_end
PT-HINT
ZT_dimer
Motif
Other DBs
NCBI-ProteinID:
ATY09894
UniProt:
A0A2K8LN88
LinkDB
All DBs
Position
complement(1031363..1035157)
Genome browser
AA seq
1264 aa
AA seq
DB search
MARRSKTPVTRVDPSAFDSPGAQVFDNPLKTEIEDSYLEYAYSVIHSRALPDARDGLKPV
HRRILFSMNENGYRPTHAYVKSSRVVGDCFVRGALVSTPDGLRPIESIAVGDQVLDSRGK
AVPVAEVYENPPDELVRITWSNGHTMLVTPGQRFRTVAADSTLDWTAARDLTGRLTLAYG
SGRRESLPQGGGRYAYLLGLITAEGFAVDRNRPADGRVRIHMCDIEPLDAVHEWATASGV
SVSRGTRVAAKPEWRDQHILTFARHDGLLAAGGPRSDAKLVPEEVLSDRATWAPYLAGLF
DGDGYIRKNHRELVYVSTSEKLVRQVYSMLADLGVHGHHWSNSRQAGHKTLLGLSVSGSD
AAVLARVMLPWITIGYKKSSLEKLTEIAYEYGGKQGNDRLPNKGVMAEFSAAHRGGGWFR
DTGGTAFRASLSMGTGTAVRYGKDRHGTALEDRSFRLSRAHQDGWIEKLRRIGSPLADRL
DALNGFSFLEVVSVERVEPEVTYDIQVGAEDHEFATEGFVVHNCMGKYHPHGDVAIYDAM
VRLAQDFSLNVPLIDGHGNFGSPDDGPAASRYTEARMSNEAMLLVGELGEDTVDFRPNYD
GSLEEPSVLPAAYPNLLVNGTSGIAVGMATNMIPHNLGEVIGAARWLINHPNATLDKLME
YVPGPDLPTGGSLLGLDEVRKAYETGRGVVRMRANVETGPLEGSRGRQAITVTELPYGVG
PEKVIEKITDEVNKSKRLTGIADVKDLTDRENGTRLVIECKVGVNPQALLADLYRLTPLE
QSFGINNLVLVDGQPQTLGLKALLEVFLKHRYEVVTRRTRYRRRKREERLHLVDGLLIAL
LNIDKVIRLIRESENAAAAKDGLMTKFKLSEIQATYILDTPLRRLTKYDRLELENEQDKL
RAEIAELTTILEDESVLKKLVSTELAKIAKDFPTERRTRLIDGDLKEVLAASKPSGPLEV
ADDPCQVILSATGLVARTAAESEEASEVRRRNGRVKHDAVSAVVHTTARGQVLLVTSRGR
AFKTDVLPLPVLPEQAGTVSLRGGMAAKELVPLEKGERVVGIAPLGEQAGDSPGLAIGTR
GGVVKVCAPDWPVRSDEFEVISLKPGDEIVGATWLTDGNETLAFISSDSSLLRFAASLIR
PQGTKSGGMAGMKLAANATAIFFGAIRTDDEEHGEPMVVTATGQSVKVTPFSEYPAKGRA
TGGVRAHRFLKGETEVQVAWVGPRPAGASRTGDPVELPETDLRRDGSGHAHPGPEVVGHL
IERG
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccgtagcaagaccccggtgacccgggtggacccgagcgcgttcgactcgccg
ggcgcgcaggtcttcgacaacccgctgaagacggagatcgaagactcgtacctggagtac
gcgtactcggtgatccattcgcgcgccctcccggacgcgcgggacggcctgaagccggtg
caccgccggatcctgttctcgatgaacgagaacggctaccgcccgacgcacgcgtacgtg
aagtcgtcgcgcgtggtcggcgactgtttcgtgcgcggcgcgctggtgtcgacgccggac
gggctccggccgatcgaatccatcgcggtcggcgaccaggtcctggacagccgcggcaag
gccgtgcccgtcgccgaggtctacgagaacccgccggacgaactcgtccgcatcacgtgg
tcgaacgggcacaccatgctcgtcacccccggacagcggttccggactgtggcggcagat
tcgaccctggactggacggccgcccgcgacctgaccggacggctgaccctcgcctacggc
agcggccgccgggaaagcctgccgcaaggcgggggccggtacgcctatttgctcggcttg
atcacggcggaagggttcgccgtcgaccggaatcgccctgcggacgggcgcgtccggatc
cacatgtgcgacatcgaacccctcgacgccgtgcacgagtgggcgacggccagcggggtg
agcgtgtctcgagggactcgcgtcgcggccaaaccggaatggcgcgaccagcacatcctc
accttcgcccggcacgacggcctgctcgcggcaggcgggccgcgcagcgacgcgaagctc
gtgcccgaggaggtcctctcggaccgggccacctgggctccgtacctcgccggtctcttc
gacggcgacggctacatccggaagaaccaccgcgagctcgtctatgtcagcacgagcgaa
aagctcgtccggcaggtctactcgatgctcgcggacctcggcgtccacggtcatcactgg
agcaactccaggcaagccgggcacaagacgctgctgggcttgtccgtcagcggatccgac
gcggcggtactggcccgcgtcatgctgccgtggatcaccatcggctacaaaaagagcagc
ctcgagaagctcactgagatcgcctacgagtacggcgggaaacaggggaacgaccggctg
cccaacaagggggtcatggccgagttctccgccgcgcaccgaggcgggggatggttccgc
gacactggcggaaccgcgttccgggcgtcgttgtcgatggggaccggcaccgcggtccgc
tacgggaaggaccggcacggcaccgcgctggaggaccgctcgttccggctttccagggcg
caccaggacggctggatcgagaaactgcgccggatcggctccccgctcgcggaccggctc
gacgcgctgaacggtttctcgttcctcgaagtggtttccgtcgaacgggtcgaacccgag
gtcacttacgatattcaggtcggcgcggaagaccacgaattcgcgaccgagggtttcgtc
gtccacaactgcatgggcaagtaccacccgcatggggacgtggcgatctacgacgccatg
gtgcggctcgcacaagacttctctttgaacgtccctctgatcgacgggcacggaaacttc
gggagcccagacgacggaccggccgcttcgcgttatacggaagcccggatgtcgaacgag
gcgatgctgctcgtcggcgaactcggcgaggacaccgtcgacttccggccgaactacgac
ggttcgctcgaagagccctcggtgctgcccgccgcgtatccgaacctgctggtcaacggc
acgtccgggatcgcggtcggcatggcgaccaacatgatcccgcacaacctcggcgaggtg
atcggcgccgcgcggtggctgatcaaccatccgaacgccacgctcgacaagctgatggag
tacgtccccggcccggacctgcccaccggcggcagcctgctgggcctggacgaggtccgc
aaggcctacgaaaccggccgcggcgtggtccgcatgcgcgcgaacgtcgagaccggcccg
ctggaaggcagccgcggccggcaggccatcacggtgaccgagctgccgtacggtgtcggc
ccggagaaggtgatcgagaagatcaccgacgaggtcaacaagtccaagcggctcaccgga
atcgcggacgtcaaggacctcaccgaccgcgagaacggcacgcggctcgtcatcgagtgc
aaggtgggcgtcaacccgcaagcgctgctggcggatctgtaccggctcacgccgctggag
cagtcgttcggcatcaacaacctggtgctcgtcgatggccagccgcagacgctcggcctg
aaggcgctgctggaagtcttcctgaagcaccgctacgaggtcgtcacgcggcgcacgcgt
tatcgccggcgcaagcgcgaagagcgcctgcatctggtcgacggtctgctgatcgcgctg
ctgaacatcgacaaggtcatccggctgatccgcgaaagcgaaaacgcggccgccgcgaag
gacggcctgatgacgaagttcaagctgtccgagatccaggcgacctacatcctggacacc
ccgctgcgccgcctcacgaagtacgaccggctggagctggaaaacgagcaggacaagctg
cgcgcggaaatcgccgagctgaccacgatcctcgaggacgagtcggtcttgaagaagctc
gtgtcgacggaactggcgaagatcgcgaaggacttcccgaccgagcgccgcacccgcctg
atcgacggggacctgaaggaagtcctggccgcgtcgaagccgtccggcccgctggaagta
gcggacgacccgtgccaggtgatcctgtcggcgaccggcctggtggcccgcacggcagcg
gaatccgaagaggcgtcggaagtccgccgcagaaacggccgcgtcaaacacgatgctgta
tcggccgtcgtgcacaccaccgcacgcggccaggtgctgctggtgaccagccgaggccgc
gcgttcaagacggacgtgctgcccctgcccgtgctcccggaacaagcaggcacggtgtcg
ctgcgcggcggcatggcggcaaaagaactggtaccgctggaaaagggcgagcgagtcgta
ggcatcgccccgctgggcgaacaagcaggcgactcgccgggcttggcgattggcacgcgc
ggtggcgtagtgaaggtgtgcgccccggactggccagtgcgctcggacgaattcgaggtc
atcagcctcaaacccggcgacgaaatcgtcggcgcgacctggctgaccgacggaaacgaa
accctggccttcatctcgtcggactcgtcgctgctgcgcttcgccgcgagcctgatccgc
ccgcaaggaaccaagagcggaggcatggcaggcatgaaactggccgcgaacgccaccgcg
atcttcttcggagccatccgcaccgacgacgaagaacacggcgaaccgatggtcgtgacc
gcgacgggccagagcgtgaaggtcacgcccttcagcgaataccccgcaaagggccgagcc
accggcggcgtgcgagcccaccgcttcctcaagggagaaaccgaggtgcaagtcgcctgg
gtaggcccgcgcccagcaggcgcaagccgcaccggcgacccagtagaactcccggaaaca
gacctccgccgagacggctcaggccacgcccaccccggcccggaggtagtaggccacctc
atcgaacgcggctag
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