KEGG   Amycolatopsis sp. AA4: CU254_05370Help
Entry
CU254_05370       CDS       T05278                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
amyc  Amycolatopsis sp. AA4
Pathway
amyc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:amyc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CU254_05370
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amyc03400]
    CU254_05370
Enzymes [BR:amyc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CU254_05370
DNA repair and recombination proteins [BR:amyc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CU254_05370
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ATY09953
UniProt: A0A2K8LV50
LinkDB All DBs
Position
complement(1106691..1108280)
Genome map
AA seq 529 aa AA seqDB search
MDGAAERLAKYRAMRNFAKTDEPAGANAPQEPGYRFVVQRHRARRKHYDFRLELGGVLVS
WAVPKGPTLDPKARRMAVHVEDHPLEYADFEGVIPRGEYGGGDVIVWDRGRWEPVDTDDP
EQALADGNLHFDLYGEKLAGRFVLIRPKKDDDGKQWFLLHKQDDHASPGWDAEDHPKSVK
SGLTNDEIAAAPPALWRSDLPATEAEVPLHAMFEPASEDELNALHELGKQGTWTVAGRQL
KVTNLDKTLIPGRDGEAPITKRELIEYYTRIAPTMLPYLAGRALNTNRFPGGVGKPGFWH
KEVPDHAPEWLHRWNYEGADPGDVHHYLVPSGVADLAWLANFAALELHAWTSRTSDVEHP
TWLLFDIDPGSETSFDDVLALARLHRTALDHFGLIGRPKTTGQRGIQIWVPIEPRYTYAD
TRAWAETVSKSIGKIVPDLVSWAWHKDRRGGLARLDYTQNVLNKTLVAPYSVRPRPGAPV
SVPLEWDELDDPDLTPDRWTIRTVLDRVAKAGDPFAQLLDVHQRLPQLS
NT seq 1590 nt NT seq  +upstreamnt  +downstreamnt
atggacggcgccgccgagaggctggcgaagtaccgcgcgatgcgcaacttcgcgaagacc
gacgagccggccggcgcgaacgccccgcaggaacctggctaccggttcgtcgtccagcgg
catcgggcgcggcggaagcactacgacttccggctcgagctgggcggcgtgctggtcagc
tgggcggtgccgaaggggccgacgctcgacccgaaggcgcggcggatggccgtgcacgtc
gaggaccatccgctggagtacgccgatttcgagggggtgatcccgcgcggcgagtacggc
ggcggcgacgtgatcgtgtgggaccgcggacgctgggagccggtcgacaccgacgatccc
gagcaggcgctcgcggacgggaacctgcacttcgacctgtacggcgagaagctggccggg
cgcttcgtgctgatccgccccaagaaggacgacgacgggaagcagtggtttctgctgcac
aagcaggacgaccacgccagcccgggctgggacgccgaggaccatccgaagtcggtgaaa
agcgggctcaccaacgacgagatcgcggccgctcccccggcgttgtggcgcagcgatctg
cccgcgaccgaagcggaagtgccgttgcacgcgatgttcgagccagcgtcggaggacgaa
ctcaacgcactgcacgagctgggcaagcagggcacgtggacggtcgccggccggcagttg
aaggtcaccaatctcgacaagacgctgatccccggccgcgacggcgaagcgccgatcacc
aaacgggaactgatcgagtactacacccggatcgcgccgacgatgctcccctacctcgcc
ggccgcgcgctcaacaccaaccggttccccggcggggtcggcaaacccgggttctggcac
aaggaagtgcccgaccacgcgccggaatggctgcaccgctggaattacgaaggggccgac
cccggcgacgtgcaccactatctcgtgccgtcgggcgtcgcggacctggcctggctggcc
aatttcgccgcactggaactgcacgcctggacgtcgcgcacgtccgacgtcgagcatccg
acctggctgctgttcgacatcgaccccggttcggaaacgtcgttcgacgacgtgctcgcg
ctcgcccggctgcaccgcaccgcgctcgaccacttcgggctgatcgggcggccgaagacg
accgggcagcgcgggatccagatctgggtgccgatcgaaccgcggtacacgtacgccgac
acccgggcgtgggcggaaaccgtgtcgaagtcgatcggcaagatcgtgccggacctggtg
agctgggcgtggcacaaggaccgccgcggcgggctcgcgcggctcgactacacgcagaac
gtgctgaacaaaaccctcgtcgcgccgtacagcgtgcggccgaggccgggggcgccggtg
tccgtcccgctggagtgggacgaactcgacgaccccgacctcactccggatcggtggacg
atccggacggtgctcgatcgcgtggcgaaggcgggagatccgttcgcgcagctgctcgac
gtgcaccaacgcctgccgcagctgtcgtga

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