Amycolatopsis sp. AA4: CU254_07345
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Entry
CU254_07345 CDS
T05278
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
amyc
Amycolatopsis sp. AA4
Pathway
amyc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CU254_07345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyc03400
]
CU254_07345
Enzymes [BR:
amyc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CU254_07345
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CU254_07345
DNA repair and recombination proteins [BR:
amyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CU254_07345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
TackOD1
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ATY10294
UniProt:
A0A2K8LPD6
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All DBs
Position
1538013..1538873
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AA seq
286 aa
AA seq
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MPELPEVETVRAGLEAHVAGRTVRAVEVLHDRAIRRHAQGAADFTGRLAGVAIEAARRRG
KYLWLELSDGEAVLAHLGMSGQMLVQPEGAPDEKHLRVRVRFADGGPELRFVDQRTFGGL
ALDELVVVDGDSLPGTIAHIARDPMDPKFDPEAAVRALRSRRTEVKRALLDQTLVSGVGN
IYADEALWRSKLHWSRPTEKLTAAQGRTLLSAASDVMSAALLAGGTSFDALYVNVNGESG
YFERSLDAYGQEGLPCRRCGSPIRREPFMNRSSFSCPRCQRRARAV
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactacccgaggtcgagaccgtccgcgccggtctcgaagcgcacgtcgccggc
cgtaccgtccgggccgtcgaggtgttgcacgaccgtgccatccggcggcatgcccaaggg
gccgccgacttcaccggacggctcgccggggtcgcgatcgaggcggcccggcggcgcggc
aaatacctgtggctggaactgtccgacggcgaggcggtcctggcgcatctcggcatgagc
ggccagatgctggtgcagccggagggcgcgccggacgagaaacatctgcgcgtccgggtg
cggttcgccgacggcgggccggaattgcggttcgtcgaccagcggacgttcggcggcctt
gccttggacgaactggtcgtggtggacggcgacagtctgccggggactatcgcgcacatc
gcgcgggatccgatggatccgaagttcgatccggaggcggcggtgcgtgcgctgcggtcg
cggcggaccgaggtgaaacgggcgttgctggaccagacgctggtgtccggggtcggcaac
atctatgccgacgaggcgttgtggcggtccaagctgcattggtcgcggccgaccgagaag
ctcactgccgcacaggggcggacgttgctgtccgcggctagcgacgtgatgtcggcggcg
ctgctggcgggcgggacgtcgttcgatgcgctttacgtgaacgtgaacggggagtctggg
tatttcgagcgatcgctcgatgcgtacgggcaggaaggactgccgtgccgtcggtgcggg
tcgccgatccggcgggagccgttcatgaatcggtcgtcgttttcgtgtcctaggtgccag
cggcgggctcgggcggtttaa
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