KEGG   Amycolatopsis sp. AA4: CU254_21255Help
Entry
CU254_21255       CDS       T05278                                 

Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
amyc  Amycolatopsis sp. AA4
Pathway
amyc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:amyc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CU254_21255
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amyc03400]
    CU254_21255
Enzymes [BR:amyc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CU254_21255
DNA repair and recombination proteins [BR:amyc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CU254_21255
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: ATY12703
UniProt: A0A2K8M2Z0
LinkDB All DBs
Position
complement(4562968..4563957)
Genome map
AA seq 329 aa AA seqDB search
MSEVAGGMPPAIEPMLASPDGGRLRDDPAYAYEFKWDGYRATMRVAPDGSTLLTSRNDND
FTARFPQLAGALGDALGGRPAVLDGEIVALDEHGRPDFGLLQNRTWKAVAYFAFDLLSLG
GVSLLDAPYEERRGLLAEIEPPDRQLVAITPWYRHSDLAEDGMTPAGLLDVARTMMLEGL
MVKARTSRYHPGRRSPEWLKHPLVQTTEVVLGGWRAGQGRREGTIGALLLGAHDPESGEL
RYLGDVGTGFTDAMLKDLQAQLVPLERKTSPFADQVPRDRARGAHWLNPEVVGEVVYRRL
TPGDGRLRHTAWRGLRPERRPDEVTVPAR
NT seq 990 nt NT seq  +upstreamnt  +downstreamnt
atgtccgaagtggccggcggcatgccgcccgcgatcgagccgatgctggcctcgcccgac
ggcggcaggctgcgcgacgacccggcgtacgcgtatgagttcaaatgggacggttaccgg
gcgaccatgcgcgtcgcgccggacgggagcacgctgctgaccagccgcaacgacaacgac
ttcaccgccagattcccgcagctggccggcgcgctcggcgacgcgctcgggggccgcccg
gcggtgctggacggcgagatcgtcgccctcgacgagcacggccgtcccgacttcgggctc
ctgcagaaccgcacctggaaagcggtcgcgtacttcgccttcgacctcctcagcctgggc
ggcgtgagcctgctcgacgcgccgtacgaggaacgccgcgggctgctcgccgagatcgag
ccgccggaccggcagctggtcgcgatcacgccctggtaccggcacagcgacctcgccgaa
gacggcatgaccccggccgggctgctcgacgtcgcgcggacgatgatgctcgaaggcttg
atggtgaaggcccgtacgtcgcggtaccacccgggacggcgcagtccggaatggctcaaa
cacccgctcgtgcagacgaccgaggtcgtgctcggcggctggcgggccggccagggccgc
cgcgagggcacgatcggcgcgctgctgctcggcgcgcacgacccggagtcgggggagctg
cggtatctgggcgacgtcggcaccggcttcaccgacgcgatgctcaaggaccttcaggca
cagctggttcccttggagcgcaagacaagcccgttcgccgaccaggtcccgcgagaccgg
gcgcgcggcgcgcactggctgaacccggaggtggtcggcgaggtcgtgtaccgccgcctc
acaccgggtgacggccgcctgcggcacacggcttggcgcgggctgcgcccggaacggcgt
ccggacgaagtcaccgttccggcgcggtaa

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