Malaciobacter mytili: AMYT_2443
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Entry
AMYT_2443 CDS
T05895
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
amyt
Malaciobacter mytili
Pathway
amyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMYT_2443 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyt03019
]
AMYT_2443 (rnr)
03016 Transfer RNA biogenesis [BR:
amyt03016
]
AMYT_2443 (rnr)
Enzymes [BR:
amyt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AMYT_2443 (rnr)
Messenger RNA biogenesis [BR:
amyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AMYT_2443 (rnr)
Transfer RNA biogenesis [BR:
amyt03016
]
Prokaryotic type
tRNA degradation factors
AMYT_2443 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
DUF295
Motif
Other DBs
NCBI-ProteinID:
AXH15978
UniProt:
A0A345J844
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All DBs
Position
complement(2478020..2479879)
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AA seq
619 aa
AA seq
DB search
MYKELFKKIINQNFDFSEDELKVFNKLIENEVLIKINDTIEINSKYKIGTIKVEKNFVIL
EDISNEHKNIKLDFDSLNGAYEGDLVIAKKVFNPRSKVKAKIIEVFSDTNKKTEALVYVK
DKALYTVKESILLHCKDTKKFKENYVYLVDNKSYEIILEIGEINNPKIDEYISLYLYKEL
IRLENELEVEAKMDDKNQRIDLTHLNFTTIDPASAKDHDDAIYYDEENQILYVAIADVSY
FVKENSALDKQAFLKSTSIYLPNRVLPMLPKKLSENMCSLRENEKRYAYVFEIHLDIKEL
SVKKSKLYEAIIESKRKFSYGRIDRVLDKKFDTFTTLEKTIFDSLIKLYEVTKAFRAKRL
LKGYDFRSSELRLKLNHKAELEDIEEEFSTASHQLVEECMLLANIEASKKVNKVGIFRIH
EEPPFKAISQLIDDVNMLGVEVKLQGNVHDTITHIQQKAKMSVLAKEIDELIIHAQTQAK
YSSKNLGHFGLGFDSYSHFTSPIRRYSDLVLHRMLKSKQTPANIEEICEHISIQERKVDQ
LVWDYEDRKYARYAYKNINEEFKAVITDCEKGQAKICSKIPGMRVVLDNYKGQNLYTKLR
VVIKSADIITKQIVASIKY
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
ttgtataaagaactatttaaaaaaattataaatcaaaattttgatttttctgaagatgaa
ttaaaagtttttaataaacttattgaaaatgaagttttaattaaaattaatgacactatt
gaaataaattctaaatataagattggaactataaaagttgaaaaaaattttgttatttta
gaagatatttctaatgaacataaaaatataaaattggattttgatagtttaaatggtgcc
tatgaaggtgaccttgtaatagcaaaaaaagtatttaatccaagaagtaaagttaaagca
aaaattattgaagtttttagtgatacaaataaaaaaactgaagctttagtatatgttaaa
gataaggcattatatactgttaaagagtcgattttacttcactgtaaagatactaaaaaa
tttaaagaaaattatgtttatttagtagataataaaagttatgaaattatattagaaatt
ggagaaattaataatcctaagattgatgaatatataagtttatatctttataaagagtta
attagacttgaaaatgagcttgaagttgaagcaaaaatggatgataaaaatcaaaggatt
gatttaacacatttaaattttactacaattgatccagcaagtgcaaaagaccatgatgat
gcaatttattatgatgaagaaaatcaaattttatatgtggcaattgctgatgtttcttat
tttgtaaaagaaaattcagctttagataaacaagcttttttaaaatcaacttctatatat
ttgccaaatagagttttaccaatgcttcctaaaaaacttagtgaaaatatgtgttcttta
agagaaaatgaaaaaagatatgcttatgtatttgaaatacatttagatataaaagagctt
agtgtaaaaaaatcaaaattatatgaagctataattgaatcaaaaagaaaattctcttat
ggaagaattgatagggtattagataaaaaatttgatacttttacaactttagaaaaaact
atttttgactcactaataaaactttatgaagttacaaaagcctttagagcaaaaagatta
ttaaaagggtatgattttaggtcaagtgaactaagattaaagcttaatcataaagctgaa
cttgaagatattgaagaagagttttcaactgcttctcatcaattagtagaagagtgcatg
ctattagctaatattgaagctagtaaaaaagtaaataaagttggtatttttagaatacat
gaagaaccaccttttaaagctattagccaattaattgatgatgtaaatatgcttggagtt
gaagttaaacttcaaggaaatgtacatgatactattactcatatccaacaaaaagcaaaa
atgtctgtattagcaaaagagatagatgaattaattattcatgctcaaacacaagcaaaa
tactcttcaaaaaatttaggacactttggtttgggatttgattcttattcacattttaca
agtcctattagaagatactcagatttagttttacatagaatgttaaaaagtaagcaaact
cctgcaaatattgaagaaatttgtgaacatatttcaattcaagaaagaaaagttgatcaa
cttgtatgggattatgaagataggaaatacgcaagatatgcctataaaaatattaatgaa
gagtttaaagctgtaattactgattgtgaaaaaggacaagcaaaaatttgttctaaaatt
cctggcatgagagtagttttagataattataagggacaaaatttatatactaaactaaga
gtagtaataaaatctgctgatattattacaaaacaaatagttgcttctataaagtattaa
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