Amycolatopsis sp. YIM 10: YIM_28210
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Entry
YIM_28210 CDS
T06270
Symbol
ykoV3
Name
(GenBank) putative DNA repair protein YkoV
KO
K10979
DNA end-binding protein Ku
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
YIM_28210 (ykoV3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_28210 (ykoV3)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
YIM_28210 (ykoV3)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Motif
Other DBs
NCBI-ProteinID:
QFU90816
UniProt:
A0A5P9PR34
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All DBs
Position
complement(5891079..5891930)
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AA seq
283 aa
AA seq
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MRAMWKGSVSFGLVTIPIHLYAATENKNVSLRQVHEEDGGRIQYKRFCTIDGKEVPYSEI
AKGYELDDGEMVVITDADLAELPLSTSKSIDVLEFVPLESIDPIYFDRTYYLEPQKAMAK
PYVLLRDALHKSGHVAIAKVAVRQRESLALLRVIGDVLVMTTMLWPDEVRAADFGFLNEE
APQIRDQELAMAGSLIDSLSEPVFEQEKYRDHYREALEALIEAKAAGKETTAVPAPAEEG
EVVDLMAALQASVSEAKKSRKAETVAETTEKPKRKSTAKKKSA
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcgatgtggaagggctcggtgtccttcgggctggtcaccatcccgatccatctg
tacgcggccacggagaacaagaacgtttccctccgtcaggtgcacgaggaggacggcggc
cgcatccagtacaagcggttctgcacgatcgacggcaaagaagtgccctacagcgaaatc
gccaagggctacgaactcgacgacggcgagatggtggtgatcaccgacgccgatctcgcc
gagctgccactgtccacttcgaagtcgatcgacgtgctggagttcgtgccgctggagtcg
atcgacccgatctacttcgaccgcacctactacctcgaaccgcagaaggcgatggccaag
ccgtacgtgctgctgcgcgacgcgctgcacaagtcgggccacgtggcgatcgccaaggtg
gcggtccgtcagcgcgagtcgctggcgctgctgcgggtgatcggcgacgtgctggtgatg
accacgatgctgtggccggacgaggtgcgcgccgcggacttcggcttcctgaacgaggag
gcgccgcagatccgcgaccaggagctggcgatggccggttcgctgatcgactcgctgtcc
gagccggtgttcgagcaggagaagtaccgcgaccactaccgcgaggcgctcgaagcgctg
atcgaggcgaaggccgcgggcaaggagaccaccgcggtgccggcgccggccgaggagggc
gaggtcgtcgacctgatggccgcgctgcaggccagtgtcagcgaggcgaagaagagccgg
aaggccgaaaccgtcgcggaaacgacggagaagcccaagcgcaagtccacggcgaagaag
aagagcgcctga
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