KEGG   Amycolatopsis mediterranei RB: B737_5141Help
Entry
B737_5141         CDS       T02804                                 

Gene name
lig
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
amz  Amycolatopsis mediterranei RB
Pathway
amz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:amz00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    B737_5141 (lig)
Enzymes [BR:amz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     B737_5141 (lig)
DNA repair and recombination proteins [BR:amz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     B737_5141 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: AGT85805
LinkDB All DBs
Position
complement(5784748..5785611)
Genome map
AA seq 287 aa AA seqDB search
MKTSHPDKVFYPEDGLTKGDVVEYYRAVADVMLPHLRGRPLTLRRFPDGIGKPGWFQKHP
GEHFPDSIRVERVPRRGGGTDEYVVCEDAATLEYLANQGTVEFHVWLSTADAPERPDRLV
LDLDPPDGTPVTELRTVARRIRDHYERVGLTAFVQATGGRGFHVLAPLDAKSETDVVLEL
SRALADRVAGDDPDRLTTAQRKDQRGDRIFLDANRNGYAQTFVAPYSLRARPGAAAATPL
DWRELGTADPAGWSLVKEKRRLARKEDPWRDLDEHAGSAEAALKQLG
NT seq 864 nt NT seq  +upstreamnt  +downstreamnt
gtgaagacttcccacccggacaaggtgttctaccccgaagacgggctcaccaagggcgac
gtcgtcgagtactaccgcgccgtcgcggacgtcatgctgccgcacctgcgcggccgtccg
ctgacgctgcggcgcttccccgacggtatcgggaagccgggctggttccagaagcacccg
ggggagcacttcccggactcgatccgggtcgagcgcgttccccggcgcggcggtggcacc
gacgagtacgtcgtgtgcgaagacgccgcgacgctggagtacctggcgaaccaggggacg
gtcgagttccacgtctggctgtccacagcagacgccccggagcggcccgaccggctggtg
ctcgacctcgacccgccggacggcacgccggtcaccgagttgcgcaccgtcgcgcggcgc
atccgcgaccactacgagcgggtcggcctgacggcgttcgtccaggcgaccggcggccgc
gggttccacgtcctcgcgccgctggacgcgaagtcggagaccgacgtggtgctggagctc
tcgcgcgccctcgccgaccgggtcgccggcgacgacccggatcggctgaccacggcccag
cgcaaggaccagcgcggcgaccggatcttcctggacgccaaccgcaacgggtacgcgcag
acgttcgtggcgccgtactcgctgcgcgcccgcccgggtgcggcggccgcgaccccgctg
gactggcgggagctgggcaccgcggacccggccggctggtccctggtcaaggagaagcgg
cggctggcccgcaaggaggatccttggcgggacctggacgagcacgcggggtcggccgag
gcggcgctgaagcagctcgggtga

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