Anoxybacillus sp. B7M1: GFC29_3184
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Entry
GFC29_3184 CDS
T04426
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
anl
Anoxybacillus sp. B7M1
Pathway
anl03030
DNA replication
anl03410
Base excision repair
anl03420
Nucleotide excision repair
anl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
anl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GFC29_3184 (ligA)
03410 Base excision repair
GFC29_3184 (ligA)
03420 Nucleotide excision repair
GFC29_3184 (ligA)
03430 Mismatch repair
GFC29_3184 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
anl03032
]
GFC29_3184 (ligA)
03400 DNA repair and recombination proteins [BR:
anl03400
]
GFC29_3184 (ligA)
Enzymes [BR:
anl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GFC29_3184 (ligA)
DNA replication proteins [BR:
anl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GFC29_3184 (ligA)
DNA repair and recombination proteins [BR:
anl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GFC29_3184 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GFC29_3184 (ligA)
MMR (mismatch excision repair)
DNA ligase
GFC29_3184 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GFC29_3184 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
HHH_8
Motif
Other DBs
NCBI-ProteinID:
ANB65379
UniProt:
A0A160FDV1
LinkDB
All DBs
Position
3178853..3180865
Genome browser
AA seq
670 aa
AA seq
DB search
MDRQTAIGRIEELRRLLDQYNYEYYVLDRPSVPDAEYDRLMQELIALEEAHPDLKTKDSP
SQRVGGQALDAFQKVEHRAPMLSLANAFNEGDLREFDRRVRQEVGDDVAYVCELKIDGLA
VSLRYEDGYFAQGATRGDGITGEDITENLKTIRSLPLRLQQPVTLEARGEAYMPKRSFER
LNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDMFIYGLANAEEMGIDSHSEALD
YLQRLGFKTNPERRRCANMEEVIEFIKEWNGKRPQLSYEIDGIVIKVDSFEQQEQLGATA
KSPRWAIAYKFPAEEVVTKLLGIELSVGRTGVVTPTALLEPVRVAGTTVQRASLHNEDLI
RAKDIMIGDAVVVKKAGDIIPEIVNVLPERRTGDEIPFAMPTHCPECKSGLVRLEGEVAL
RCLNPKCPAQIREGLIHFVSRQAMNIEGLGEKVIAQLFQQGLVHDVADLYTLTKEQLVPL
ERMGEKSAANLLAAIEASKQNSLERLLFGLGIRHVGAKAAKVLAEHFETMERLESATKEE
LLEIHEIGEKMADSIVTYFSRQEVKELLNELRSYGVNMTYKGTKSVKAVEGTSYFSGKTV
VLTGKLEALSRSEAKERIEQLGGNVTGSVSKKTDLVIAGAEAGSKLTKAQQLHIEIWDEA
RFLQELERQV
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatcgacaaacagctattgggcgcattgaggagcttcgccgtcttttagatcaatat
aactatgagtattacgtattggatcgaccatcggtgcctgatgctgaatatgaccggctg
atgcaggagctcatcgctcttgaagaggcgcatcctgatttaaaaacgaaagactctcct
tcccagcgtgtaggcggacaagcgttagatgctttccaaaaagtggagcatcgtgctccg
atgctaagtcttgccaatgcttttaatgaaggagatttgcgggagtttgaccgccgcgtt
cgtcaagaagttggcgatgatgtcgcgtatgtatgtgaactgaaaatcgacggacttgct
gtttccttgcgctatgaggatggctattttgctcaaggggctacacggggcgatggaata
acaggagaggacatcaccgaaaatttaaaaaccattcgttcgctcccgttgcggctgcag
caacctgtcacgttagaggcgcgcggtgaagcctatatgccgaaaagatcgtttgagcga
ttaaatgaacagcgccgccagcgcggcgaggaactgtttgccaacccgcgcaatgcagcc
gctggatcgttgcgtcagcttgatccaaaaattgcggcctctcgccatttagacatgttt
atttatggtttagctaatgcagaggaaatgggaatcgattcgcacagtgaggcgcttgat
tatttgcaacggcttggatttaaaaccaatccggagcggcggagatgtgcgaatatggaa
gaagtaattgaatttataaaggaatggaatgggaaacgtccgcagctttcctatgagatt
gatggcattgtgattaaagtggattcatttgaacagcaggaacagctcggcgcaacggct
aaaagccctcgttgggcgatcgcttacaaatttccagccgaagaagtagtcacgaagctg
cttggcattgaattaagcgtcggccgtacgggagtggtcacgccaaccgcgcttttagaa
ccagttcgcgttgctggcacaacggtgcagagagcttcgcttcataatgaagatttgatt
cgagcgaaggatattatgattggcgacgccgtcgttgtcaaaaaagcaggtgacattatt
cctgaaattgtaaatgttttgcctgaaaggcgaacgggagacgaaattccttttgcaatg
ccgacccattgtccagaatgtaaaagcgggcttgtccgcttagaaggagaggtggcgctt
cgctgtttaaacccaaaatgtccagcccaaattcgcgaaggtttaatccattttgtttcc
cgacaggcgatgaacattgagggacttggcgaaaaggtgattgctcaattgtttcaacaa
gggcttgtacatgacgtggccgatttgtatacattaacaaaagagcagctcgttcctttg
gagcggatgggtgaaaagtctgccgcgaatttgcttgcagcgattgaagcgtcaaagcaa
aattcgctggaacgtcttttgttcggacttggcattcgccatgtcggagcgaaagcggcg
aaagtacttgctgagcattttgaaacaatggaacgtcttgagtcggctacgaaggaagaa
ttgctggagattcacgaaatcggcgaaaaaatggccgattccattgtcacttatttttcg
cggcaggaagtaaaagaactgttgaacgagctccgttcttatggagtgaatatgacttac
aaaggaacaaaatcagtaaaagcagttgaaggaacgtcttatttttctggaaaaacggtc
gtattaaccggcaagctggaagcattatcgcgcagtgaagcgaaagaaaggatcgaacag
cttggcggcaacgtgacgggaagcgtcagcaaaaagaccgatttagtcattgccggtgca
gaagccggatcgaaattaacgaaagcgcagcagctccatattgaaatttgggatgaagcg
cgctttcttcaagaacttgagcggcaggtgtaa
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integrated database retrieval system
