Amphiprion ocellaris (clown anemonefish): 111573227
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Entry
111573227 CDS
T06018
Name
(RefSeq) collagen alpha-2(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111573227
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111573227
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111573227
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Amnionless
Motif
Other DBs
NCBI-GeneID:
111573227
NCBI-ProteinID:
XP_023133060
LinkDB
All DBs
Position
Unknown
AA seq
1587 aa
AA seq
DB search
MGPWFCSRITVCLVLTLAQVIAVTCQEDAKNDTCIENGKVYANNDMWSPEPCKVCVCDSG
TSVCENVVCEDLGDCQKTVTPDGECCPVCLTAASTLTPSTDPETGVNEKKGDSCTVDGEL
YHHNDIWKPEPCRVCVCDNGVSICDEVQCDTLSNCQKVVTPEGECCPVCDTFASAGRMIE
ILGFKGQKGEPGDIPYVVGHPGLPGPSGPPGAQGPPGPRGFKGRRGFQGPPGFDGEPGVP
GNPGEPGPPGHPSPPGGHLVSQMASGFSEKSGLAGMVTGTRGEAGPRGLPGSPGAAGPPG
GQGIPGEAGDTGPMGEPGHRGPDGPPGKPGPDGESGPAGATGEPGFPGSAGARGFPGLPG
LPGLKGHKGAAGLFGPRGESGAAGTKGVSGTPGGMGAPGPVGPAGMQGERGRAGPTGPVG
KRGTPGHVGKPGPLGPLGIPGIPGFPGNPGMKGEAGPTGVRGSPGQQGPRGDAGHVGPPG
PTGQQGAAGPDGAPGARGQAGLAGVQGPAGLPGPSGPPGPQGTTGAEGPKGQLGEVGVPG
FKGEAGLKGERGDHGAQGPLGPIGEDGKRGPRGDAGSIGPPGPPGETGAPGNRGFPGADG
LPGQKGAQGERGLQGTLGAKGLSGDPGRNGEPGLTGARGLTGLIGAQGPEGKLGPVGSGG
EDGKQGPAGSVGNRGSAGPMGLPGPKGFPGDAGKIGEAGSPGVPGQRGPNGKDGEEGAAG
PAGPAGPAGKRGEQGPQGVNGFQGLPGQPGPPGESGKPGDEGLAGEVGAGGATGPRGERG
PPGERGEIGPNGLQGPKGSPGGPGPDGPKGNPGPKGAGGEPGGPGLMGMPGERGIPGPSG
PKGDAGSVGDKGPEGKAGADGARGLAGPVGPAGSSGPNGEKGETGPPGPAGRRGSRGIAG
STGEPGPTGAAGFPGTPGVDGQPGVKGETGEEGKKGEGGSPGPQGMAGKPGTQGPVGVAG
LKGARGTQGPSGSPGFPGLPGGVGPTGALGAVGADGPIGAPGKPGPAGIRGENGAVGRQG
ESGPPGPAGSPGEKGESGEDGPPGPDGPPGPAGAAGQRGVVGQPGLRGEGGLLGLPGPAG
PPGKPGTPGTQGGPGPAGGVGLPGATGPRGDAGPEGIAGAEGSPGKDGLVGQRGDKGNPG
QEGLAGVTGSPGTEGPVGLTGSPGQRGENGPRGAPGPQGPAGVRGKVGPQGPQGDKGAAG
EPGERGQKGHRGFTGLHGLPGITGATGDVGAVGIVGPAGQRGPPGVSGPPGKEGNMGQPG
PMGAPGSRGSSGDVGAQGPPGEAGPPGPPGSPGPPTAAMEDLLVAPVDYDGNGDVPEAVE
FSEYDAAADPPPPPEFNKDEALPNKNSAVLQETGVHATLKTLGGHLQNLRSPDGSKTNPA
KTCQDIRQCYPQKKSGDYWIDPNQGSTKDAIRVFCRMETGETCISANPPSIPRKAWWTKS
SPNANKAVWFGADMNGGNRLRYGNQEEQPNAVAVQLKLLQLLSRESHQNITYHCRNSVAY
KDAKGNLKKALILRGSNGQELRAQGVNRLRYSVIEDGCSKSSGEWSKTVLEYRTQTPARL
PVVDVAPMDIGKASQEFGLDIGPVCFS
NT seq
4764 nt
NT seq
+upstream
nt +downstream
nt
atgggcccctggttctgctctaggattaccgtctgcctggtcctcactttggctcaggtg
atcgccgtgacctgccaagaagatgccaagaacgacacctgcatagaaaatgggaaagtc
tacgccaacaacgacatgtggagcccggagccctgtaaggtctgcgtgtgcgactcgggg
acgtcggtttgtgagaacgtggtttgtgaggacctcggagactgtcagaagacggtgaca
ccggacggagagtgttgtcccgtttgtctgactgcagcttcaacactgacgcccagcaca
gacccagaaacaggtgtgaatgagaagaaaggcgacagctgcacggtggacggagaactc
taccatcacaacgacatctggaaacctgaaccgtgtcgcgtgtgcgtgtgcgataacggc
gtgtccatctgtgacgaggttcagtgcgacacgttgtccaactgtcagaaggtggtgacg
ccggagggagagtgctgccccgtgtgcgacaccttcgctagcgccggcaggatgatcgaa
atcctgggtttcaagggtcagaaaggagaacctggtgatattccatatgtggtgggacac
cctggacttcctggaccctcaggtcctccaggagctcagggacctcctggaccaagaggc
ttcaaaggcagaagaggcttccagggacctccagggtttgacggagagccgggagttcca
ggaaacccaggagaaccaggaccacctggacacccttctcctccagggggacacctggtg
tctcagatggcttcaggtttcagtgagaagtctggtctggctgggatggtgacaggaacc
aggggtgaagcaggaccacgaggacttccagggtctcctggagctgctggtccacctgga
ggtcaggggattcctggagaggctggagacacaggaccaatgggagagccggggcatcga
gggccagatggacctccaggaaaaccaggacctgatggagaatccggacctgcaggagcg
acaggagaaccagggtttccaggatcagcgggcgccagaggattccctggacttccagga
ctcccaggactgaaaggacacaaaggagctgctggactcttcgggcctagaggtgaatct
ggagcagcaggaaccaagggcgtttctggtactcctggagggatgggcgcccctggtcct
gtgggtccggctgggatgcagggagaacgaggacgagccggaccgacgggtcctgtgggt
aaacgtggaacacccggacatgttgggaaaccaggacctctgggtcctttgggaatccca
ggaatcccaggattccctggaaatccaggaatgaagggtgaagcaggaccgacgggggtc
cgaggaagtccaggacagcagggacccagaggagacgctggacatgttggacctccagga
cccaccggacagcagggcgctgcaggacctgacggagctccaggagcacgtggacaagca
ggtctggctggagttcagggtccagcaggactcccggggccctcaggtccccccggcccc
caggggaccaccggagcagaaggacctaaaggacaactgggggaagtcggagttccagga
ttcaaaggagaagctggactgaagggagaacgaggcgaccacggagctcagggtcctctg
ggccccattggggaagacgggaagcgaggcccccgaggtgatgctggatccatcggacct
ccaggacctccaggagaaaccggagctccaggaaaccgaggattccccggagctgatggt
ttaccgggacaaaagggagctcagggagaacgaggccttcagggaaccctcggagctaaa
ggtttatctggagatccaggacgcaacggagagccgggtttaactggagctcggggactc
acaggactgatcggtgctcagggaccagagggtaaactgggaccagtgggatcaggagga
gaagacggcaaacaaggcccggctggttctgttggaaaccgaggatcagctggacccatg
ggcctcccgggacccaagggcttcccaggagacgctggtaagatcggagaggctggaagt
cctggagttcctggtcaaaggggaccaaatggaaaagatggagaggaaggagctgctggt
cccgctggtcctgctggtccagcaggaaagagaggagagcagggacctcaaggagtcaac
ggcttccagggtttgcccggacaaccaggtcctcctggagagtctggaaaaccaggtgat
gagggtcttgctggagaggtcggtgcaggaggagctacaggtccaagaggagaaagaggt
cctccaggagaaagaggtgaaatcggacccaacgggctgcagggacccaaaggtagtcca
ggtggaccaggaccagatgggccaaaggggaaccctggtccaaagggagcaggaggagaa
ccaggaggtccaggactgatggggatgcctggagaaagaggcataccaggaccttcaggc
ccaaagggagatgctggttctgttggagataaaggacctgaaggtaaagctggagctgat
ggagccaggggtcttgctggtcctgttggacctgctggttccagtggaccaaacggagag
aagggtgaaactggacctccaggacctgcaggacgccgaggctcaagaggaattgctggt
tctactggtgagcctggtcctactggggctgctgggttccctggaactcctggagttgac
ggtcagccgggggttaaaggtgagacaggtgaggaaggaaagaagggagaaggaggatca
cctggccctcaggggatggccgggaagccaggaactcagggtcctgttggtgtcgctgga
ctgaaaggagccagaggaactcagggtccatcgggttctcctggttttcctgggctgcct
ggaggagtcggtccaaccggtgctcttggtgctgtcggtgcagatgggcccatcggagct
ccaggtaaaccaggtcctgctgggatccgtggagagaacggagctgtgggtcgtcagggt
gagagcggacctccaggtccagccggtagccctggagagaagggagagtctggagaggac
ggtcctccgggtccagacggacctccaggacctgctggagctgctggacagcgaggagtg
gtgggtcagcctggactgagaggagaaggaggtctgctgggtctgccgggtcctgctggt
ccaccaggaaaaccaggaactcctggaactcagggaggtccaggtcctgctggaggagtg
ggtttaccaggagccacggggcccagaggagatgctggacctgagggcatcgctggagct
gagggctctcctggtaaagacggtctcgtaggacagaggggagataaggggaaccctggt
caggagggtctggctggtgttacagggtctccaggtaccgagggtcccgtgggattaact
ggaagtccaggacaaagaggagaaaacggacccagaggagctcctggacctcaaggacca
gctggagttcgagggaaagtgggccctcaagggcctcagggagataaaggagccgctgga
gagcctggagagagaggtcagaaaggacaccgaggtttcaccggcctccacggcctgcct
ggaataaccggtgccacaggagatgtaggagctgtaggaatagttggaccagctggacag
agagggcctccaggagtttcggggcctccaggaaaggaaggaaacatggggcagccagga
ccgatgggggctcctggaagcagaggatccagcggagatgtcggagctcagggtcctcct
ggtgaagccggaccccccggccctccaggctctccaggacctcccaccgccgctatggag
gacctgttggtcgccccggtcgactacgacggtaacggcgatgttccggaagccgtggag
ttctccgagtacgacgcagctgccgatcctcctccacctccggagttcaacaaagacgaa
gctcttcccaacaagaactctgccgtcctgcaggagaccggcgtccacgccacgctgaag
acgctcggaggacatctgcagaacctccgcagccccgacggcagcaagaccaacccagcc
aagacctgccaggacatccggcagtgctacccccagaagaagagcggcgactactggatc
gatccaaaccaggggagcactaaagacgccatcagggtcttctgccgcatggagactgga
gaaacctgcatctctgccaacccccccagcatcccccggaaggcctggtggaccaaatcc
agccccaacgccaacaaggccgtctggttcggagccgacatgaacggaggaaacagactg
agatatggcaaccaggaggagcagcccaacgccgtggccgtccagctgaagctgctgcag
cttctgtccagagagtcgcaccagaacatcacctaccactgcaggaacagcgtggcttat
aaagacgccaagggcaacctgaagaaggctctgatcctccgaggctccaacggccaggag
ctgcgagcgcagggcgtcaaccggctgagatactccgtcatcgaggacggctgctcgaaa
tccagtggagagtggagtaagacggtgctggagtacaggactcagactccagccaggctg
cccgtcgtcgacgtggcccccatggacatcggaaaggccagccaggagttcggcctcgac
atcggccccgtgtgcttctcataa
DBGET
integrated database retrieval system
