Amphiprion ocellaris (clown anemonefish): 111573347
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Entry
111573347 CDS
T06018
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04510
Focal adhesion
aoce04512
ECM-receptor interaction
aoce04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111573347 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111573347 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
111573347 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111573347 (col1a2)
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111573347 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
SNARE
Motif
Other DBs
NCBI-GeneID:
111573347
NCBI-ProteinID:
XP_023133229
Ensembl:
ENSAOCG00000015957
LinkDB
All DBs
Position
Unknown
AA seq
1356 aa
AA seq
DB search
MLSFVDTRILLLLAVTSYLASCQYAGSVKGPRGDKGPRGDRGPQGPNGKDGKPGLPGPPG
PPGPPGLGGNFAAQYDGAKAPDPGPGPMGMMGARGPPGPPGPPGPQGHTGHAGEPGEPGQ
TGPVGARGPPGPPGKAGEDGNNGRPGKPGDRGTAGPQGARGFPGTPGLPGMKGHRGYTGL
DGRKGEPGAAGPKGEPGAHGAAGSPGLAGSRGLPGERGRAGPAGPAGARGADGNIGPAGP
AGPLGAAGPPGFPGGPGPKGEIGPAGATGPSGPQGSRGEPGPNGAVGPVGPTGNPGANGL
NGAKGAAGTPGVAGAPGFPGPRGGPGPQGPQGATGPRGLAGDPGTQGVKGDGGPKGEPGN
SGPQGAPGPQGEEGKRGPSGELGATGPAGNRGARGAPGSRGMPGAEGRTGPIGMPGARGS
TGSAGPRGPPGDAGRAGEPGPAGLRGLPGSPGSSGPPGKEGPAGPAGQDGRTGPPGPTGP
RGQPGNIGFPGPKGASGDPGKPGDKGATGPSGLRGAPGPDGNNGATGATGPAGGPGEKGE
QGASGAPGFQGLPGPAGPAGEAGKPGDRGIPGDQGLAGPAGGKGERGNPGAAGAAGAQGP
IGPRGPAGAPGPDGGKGEPGAAGNAGAPGHQGPSGMPGERGAAGPPGGKGEKGEAGHRGP
DGNAGRDGARGMPGPAGPPGPTGANGDKGESGSFGPAGPAGPRGSSGERGEVGPAGAPGF
AGPPGADGQPGVRGERGPAGGKGELGPAGPAGPAGQSGPAGPSGPSGPAGARGDTGPAGL
TGFPGAAGRVGAAGPSGIVGPPGPAGPAGKDGPRGLRGDVGPAGPSGEQGMVGPPGLAGD
KGPSGESGPPGPAGAPGASGPLGLQGFVGLPGARGDRGTPGGAGGVGEPGRVGPAGPPGA
RGPPGNIGMPGMTGPQGEAGREGNPGNDGPPGRPGIAGFKGDRGEPGPAGSMGLAGAPGP
AGPTGGAGRPGNRGEAGPGGPAGPVGAAGARGAAGPAGPRGEKGGAGDKGERGMKGLRGH
PGLQGMPGPSGPSGDTGSAGPSGPAGPRGPAGPHGPVGKDGRAGSHGTMGSPGARGPPGY
SGPAGPPGPPGLPGPAGPSGGGYDVSGYDEYRADQPAMRAKDYEVDATIKSLNTQIENLL
TPEGSRKNPARTCRDIKLSHPEWSSGFYWIDPNQGCINDAIKVFCDFTTRETCIYAHPES
IARKNWFRSTENKKHVWFGETINGGTEFTYNDENLSHQSMATQLAFMRLLSNQASQNITY
HCKNSVAYMDGVSGNLKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTTHTGEWSKTVIE
YRTNKPSRLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacccggattctgttgctgcttgcagtaacttcatacctagca
tcatgtcaatacgcgggaagcgtcaagggtcccagaggagacaaaggacctcgaggtgac
aggggtcctcagggccctaatggaaaagatggcaaacccggactccccggcccccctggc
ccccctggtccccctggacttggaggaaactttgctgctcagtatgatggtgcaaaagct
cctgatcccggccccggacccatgggcatgatgggtgcaagaggccctcccggacctcct
ggaccccctggaccccagggacacaccggacatgctggtgagcccggagagcccggacag
actggccccgttggtgctcgtggtccccctggacctcctggcaaagctggagaggacggt
aacaatggcagacctggcaagcctggagacagaggtacagccggacctcagggtgctcgc
ggattccccggaacccctggactcccaggaatgaagggacacagaggttacactggtctg
gatggacgcaagggagagcctggtgccgctggccccaagggtgagcctggtgcccacgga
gctgctggaagtcctggactggctggatctcgtggtctgcctggtgagagaggtcgtgct
ggccctgctggccccgctggtgctcgtggtgctgatggcaacattggacccgctggccct
gccggtcccctcggtgctgctggtcccccaggtttccccggtggccccggccccaaggga
gagattggacctgctggagctactggcccaagtggacctcagggatctagaggagagccc
ggacctaatggtgctgttggccccgttggtcctactggtaaccctggtgctaatggcctg
aacggagccaagggagctgctggtacccccggtgttgctggagctcctggcttccctgga
ccaagaggaggacctggaccccagggacctcagggtgctactggacctagaggcctggct
ggagatcctggtactcagggtgttaagggagatggtggacccaaaggagagcctggtaac
tctggacctcagggagcccccggacctcagggtgaggagggcaagagaggaccttctggt
gagctcggtgccactggccctgctggaaaccgtggagctagaggcgctcctggcagccgt
ggtatgcctggtgctgagggaagaactggccccattggtatgcctggtgctcgtggttct
actggttccgctggacctcgtggaccccccggagatgctggccgtgctggtgagcctgga
cccgctggactcaggggtctccccggaagccctggaagctctggacccccaggaaaggag
ggacctgctggtcctgctggacaagatggccgcactggacctcctggcccaactggaccc
agaggccagcccggaaacattggtttccctggacccaaaggagcttctggcgaccctggc
aagcctggagacaagggagccactggacccagtggactgagaggagcccctggacctgat
ggcaacaatggagccactggcgccactggacctgctggcggccctggtgagaagggagag
cagggagcttctggagctcctggcttccagggtctgcctggacctgctggacccgctgga
gaggctggcaagccaggagacagaggtatcccaggagaccagggacttgctggacctgct
ggtggaaagggagagcgtggtaaccctggtgctgctggagccgccggagctcagggacca
attggaccccgtggacccgctggtgcccctggacccgatggtggcaagggagagcctggt
gctgccggaaatgctggtgctcccggacatcagggacctagtggcatgcctggtgagcgc
ggagctgctggtcctcctggaggcaagggagagaagggagaggctggacacagaggccct
gacggcaatgctggaagagatggtgcccgtggtatgcctggacctgctggaccccctgga
cctactggagccaatggtgacaagggtgagagtggttcctttggacctgccggacctgct
ggaccccgtggatcctctggagagcgtggagaggttggccctgctggagctcctggattc
gctggaccccctggtgctgatggtcagcctggagtaagaggagagcgtggacctgctggt
ggaaagggagaacttggccccgctggccctgctggacccgctggacagtctggacctgct
ggtccttctggcccttctggacctgctggtgctcgtggagacactggtcccgctggtctg
actggtttccctggtgctgctggcagagttggtgctgctggtccctctggtattgttgga
ccccctggccctgctggtcccgctggtaaggatggtcctcgtggtctccgtggtgatgtt
ggacccgctggaccttctggcgagcagggaatggttggacctcctggtctagctggagac
aagggaccctctggagagtctggaccccctggtcctgctggtgctcctggagcttctggt
cctcttggacttcagggattcgttggtctgcctggtgctagaggagatcgtggtacacct
ggtggtgctggtggtgtgggagagcctggtagagttggacctgctggtcctcctggagcc
cgtggtccccctggaaacattggcatgcctggtatgaccggaccccagggagaggctgga
cgtgagggtaaccctggtaatgatggacctcctggtcgtcctggtattgctggattcaag
ggagaccgtggtgagcccggacctgctggttccatgggacttgctggtgcccctggacct
gctggacccactggaggtgctggcagacctggaaaccgtggagaggctggcccaggagga
cccgctggacctgttggtgctgctggagctagaggcgctgctggacctgctggaccccgt
ggtgagaagggaggtgctggagacaagggagagagaggcatgaagggtctgcgtggacat
cctggtctccagggaatgcctggaccttctggaccatctggtgacactggttctgctgga
cccagcggacctgctggacccagaggacctgctggaccccatggacccgttggtaaggat
ggtagagctggttcccatggtactatgggctctcctggtgctcgtggaccccctggatac
tctggacctgctggtccccctggacctcctggtctgcctggacctgctggcccctctggt
ggtggatacgatgtctccggatacgatgagtacagagccgatcagcctgctatgagagcc
aaggactacgaggttgatgccaccatcaagtcactcaacactcagatcgagaacctgctc
acccctgagggatccaggaagaaccccgcccgcacctgccgtgacatcaagctcagccac
cccgagtggagcagcggattctattggattgaccccaaccagggctgcatcaacgacgcc
atcaaggtcttctgcgacttcaccacccgcgagacctgcatctatgcccaccctgagagc
atcgcccgcaagaactggttcagaagcaccgagaacaagaagcacgtctggttcggagag
accatcaacggtggtactgagttcacctacaacgacgagaacctcagccaccagagcatg
gccacccagctcgccttcatgcgcctgctgtccaaccaggctagccagaacatcacctac
cactgcaagaacagcgttgcctacatggatggtgtgagcggcaacctgaagaaggctgtg
gtgctccagggctccaacgatgtggagctgagggccgagggcaacagccgcttcaccttc
tccgtgctggaggacggctgcactacacacactggtgagtggagcaagacagtgattgag
tacagaacaaataaaccatctcgcctgcccatcctcgacattgcacctttggacattggt
ggagctgatcaggagtttggtttggacattggcccagtctgtttcaaataa
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