Asparagus officinalis (garden asparagus): 109822519
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Entry
109822519 CDS
T05243
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109822519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aof03400
]
109822519
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109822519
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
ATG17_like
Motif
Other DBs
NCBI-GeneID:
109822519
NCBI-ProteinID:
XP_020244329
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Position
1:complement(32477279..32504184)
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AA seq
944 aa
AA seq
DB search
MEGDFSSEEQFKLPELKLDAKQAQGFISFFKTLPRDARAVRFFDRRDYYTAHGENATFIA
KTYYHTTSALRQLGSGPDGISSVSVSKNMFETIARDILLERTDHTMEVYEGSGSKWTLTK
TGTPGNIGCFEDVLFANTDMQDSPVTIALFPNFRDNQYTVGLGFVDLTNKRLGLAEFLDD
SQFTNVESVLVALGCKECLLPIESGKSIELESLCNALTRCGVLVTERKKSEFKSRDLVQD
LGRIIRGPIEPVRDLLSEFECALGALGALLSYVELLADDSNYGSYTIHKYNLYSYMRLDS
AAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVEEINCRLDLVQ
AFVDDAELRQGLRLHLKRISDIERLMNSLKKRTPSLLPVIKLYQSCIRLPHIKGVLECYE
GQYSPLIRRKYLEPLEDLMDENKVRKFIALVEVAVDLDQLENGEYMISPSYDSNLVALRD
ELNTVEEQIHKLHKQIANDLDVSIDKALKLEKGTQFGHVLRITKKEEQKVRKKLTTHFIV
LETRKDGVKFTNSKLKKLGDEYQKILNEYTRVQKDIVCRVVKTAASFSEVFETCAVILSE
LDVLLSFADLATSCPIPYIRPDITPSDKGDIILEGSRHPCVEAQDGVNFIPNDCSLVRGK
SWFQIITGPNMGGKSTFIRQVGANVLMAQVGCFVPSDRASISIRDCIFARVGAGDCQLRG
VSTFMQEMLETASILKGATEKSLVIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFA
THFHELTALAHNDESHAISTKGVSNYHVGAHIDPSNRKLTMLYKLNPGACDQSFGIHVAE
FANFPDEVIALAKSKAAELEDFSNIPNMSGDLEDEVQSNKRRKTEFSPDEVVKGQDRAHR
LLREITDMSWNQFDLKEAMRHAHKLRKDLETDAAHNYPWLQKFF
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggagggggacttctcatcggaggaacaattcaagctaccggagctcaaattagatgca
aagcaagcgcagggtttcatatcgttcttcaaaaccctaccccgcgatgcaagggctgtt
cgtttctttgatcgccgggattattatactgctcacggtgaaaatgccactttcattgca
aagacatattatcacacaacatctgctctgcgacaactgggtagtggtccagatggaatt
tctagtgtaagtgtaagtaaaaatatgtttgaaacaatagctcgtgatatcttgcttgag
agaacagatcatactatggaggtttatgaaggaagtggctccaagtggacgttgactaaa
actgggactcctggcaatattggttgctttgaagatgttttgtttgccaacactgacatg
caggactcgccagtgacaattgcgctatttccaaactttcgggataatcagtatacagtt
ggactgggttttgtggatttgacaaataaaagattgggcctggcagaatttcttgatgat
agccagtttacaaatgtggaatctgttttggttgctcttggatgcaaggaatgcctctta
cctatagaaagtggaaaatcaattgaattggaatctctttgtaatgcactgactagatgt
ggtgttctcgtgactgagaggaagaaatcagagttcaagtcaagagatctggtacaggac
cttggcaggatcataaggggtccgattgaaccggttcgagatttactttctgaatttgaa
tgtgcattgggtgccctgggggcattattgtcatatgtggaattacttgcagatgacagc
aactatggaagttataccatccacaagtacaatctgtatagttatatgagattggattct
gcagctatgagggcattgaatgttttggagagcaaaacagatgcaaacaaaaattttagc
ttgtttggtttgatgaacagaacctgcacagctggtatgggcaaacgattgctaaatagg
tggctcaaacaacctttgttggatgtagaagaaatcaattgtagactggatcttgttcag
gcatttgtggatgatgcagaacttcgccagggtctgaggctacacttgaaaagaatttca
gacatagagcgattgatgaatagtctgaagaaacgaactcctagcttgctgccagtcata
aagctttatcagtcatgcattagacttccacatattaaaggtgttcttgagtgttatgaa
ggccaatattcaccactgataagaagaaaatatttggagccgctggaagatttgatggat
gagaataaagtgagaaaatttatagctcttgtcgaggttgcggtagaccttgatcaactt
gagaacggagaatacatgatatcaccaagttatgattccaacttagttgcactgagagat
gaacttaatacggttgaggaacaaatacacaaattgcacaaacaaatagcaaatgatctg
gatgtgtctattgataaggctctgaagttggagaaaggtacccaatttggacatgtcctc
aggatcacgaagaaagaggagcagaaagtgaggaaaaagctcactacccatttcattgtt
ctggaaactcgtaaggatggggtgaaattcaccaattccaagcttaaaaagttgggagat
gaataccagaaaattctgaatgagtatacaagagtacaaaaagatatagtttgccgagta
gttaagactgctgcttccttttctgaggtctttgagacttgtgctgttattctttctgag
cttgatgtgttactgagttttgctgatcttgctacaagttgtccaattccatacataagg
ccagatattacaccttcggataaaggagatattatcctagaaggtagtcgacatccttgt
gttgaggctcaggacggagtcaatttcatacctaatgattgttctttagtgcgtgggaag
agttggtttcagattatcactggtcctaacatgggtggtaaatccacctttatacgacag
gttggcgcgaatgtgttgatggcacaagttggttgctttgttccttctgatagggcaagc
attagcattcgtgattgcatattcgctcgtgttggggctggggattgccaacttcgtggg
gtttctaccttcatgcaagaaatgcttgaaactgcatccatcttgaaaggcgccactgag
aagtcgctggtaataatcgatgagctgggccgtggtacatctacctacgatggatttggt
ttagcatgggctatttgtgagcacctagtggaagtgataaaagctcctacattgtttgca
actcacttccatgaactgactgcattagctcataatgatgaatctcatgctatatctacc
aaaggagtgtctaactatcatgttggggcgcacatagatccatctaatcgcaaattaaca
atgctctataagcttaacccaggtgcttgtgatcaaagttttggcattcatgtagcagaa
tttgcgaattttcctgatgaagttattgctttagcaaaaagtaaggctgctgaattggaa
gacttctctaacatccctaacatgtctggtgatctggaagatgaggttcaatccaataaa
aggaggaaaactgaattcagtcctgatgaggtggtcaaaggtcaagatcgagctcatcgt
ctcctacgggagattactgatatgtcatggaatcagtttgacttgaaggaggctatgcga
catgcccataaactgagaaaagatctagagactgatgcagctcacaactatccatggctc
caaaagttcttctga
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