KEGG   Asparagus officinalis (garden asparagus): 109837785Help
Entry
109837785         CDS       T05243                                 

Definition
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03030  DNA replication
aof03410  Base excision repair
aof03420  Nucleotide excision repair
aof03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109837785
   03410 Base excision repair
    109837785
   03420 Nucleotide excision repair
    109837785
   03430 Mismatch repair
    109837785
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aof03032]
    109837785
   03400 DNA repair and recombination proteins [BR:aof03400]
    109837785
Enzymes [BR:aof01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     109837785
    6.5.1.6  DNA ligase (ATP or NAD+)
     109837785
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     109837785
DNA replication proteins [BR:aof03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    109837785
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     109837785
DNA repair and recombination proteins [BR:aof03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     109837785
   NER (nucleotide excision repair)
    Other NER factors
     109837785
   MMR (mismatch excision repair)
    Other MMR factors
     109837785
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Motif
Other DBs
NCBI-GeneID: 109837785
NCBI-ProteinID: XP_020261727
LinkDB All DBs
Position
4
AA seq 453 aa AA seqDB search
MRIGLAEKTVLVALGQAAMHSATLPAPPSQIQSPLEEAAKIMKQVYSVLPIYDKIVPALL
SVGVWKLSEACNFSLGVPVGPMLAKPTKSVSEILDKFQGMEFTSEYKYDGERAQIHYMED
GSVEIYSRNAERNTGKYPDVVNCISRIMKPTVKSFVLDCEIVAYDRVKKKILPFQVLSTR
ARKGVILSDIKVAVCIYAFDILYINGQPLLQEQLKLRREHLYNSFEELPGEFQFATTITS
NDLEEIQKFLDDAVSASCEGLIIKTLGKDATYEPSKRSNNWLKLKKDYMDSIGDSFDLVP
IAAFHGRGKRTGVYGSFLLACYDEHNEEYQSICNIGTGFSEQQLEECSKNLRGKIILKPK
PYYRYADSANPDVWFEPAEVWEVKAADLSISPVHRAANGIVDPNKGISLRFPRLLRVRDD
KNPDQATTSDQVADMYRAQKINHTNHQEEEDDD
NT seq 1362 nt NT seq  +upstreamnt  +downstreamnt
atgcgaattggcttggccgagaaaactgttcttgttgctcttgggcaggctgctatgcat
tctgcaacgcttcctgctccaccttcacaaattcagtcccctcttgaagaggctgcaaaa
atcatgaaacaagtctattcagttcttcctatatacgataagattgtgccagctcttctt
agtgttggagtgtggaagctttcagaggcatgcaacttctctttgggtgtacctgttggt
cctatgttagctaaaccaacaaaatctgtctcggagatccttgataaattccagggcatg
gaattcacctctgaatacaaatatgatggtgaacgtgctcagatacactatatggaggat
ggctcagttgaaatatacagtcgtaatgctgagcgaaatacgggaaagtatcctgatgtt
gtcaattgtatatcaagaatcatgaaacctactgttaaatcctttgttctggattgtgaa
attgttgcctatgaccgcgtgaagaagaaaattttgcctttccaggtcctcagcactcga
gctcgcaagggagttatcttaagtgatattaaagttgcagtatgcatctatgcctttgat
atactgtacataaatgggcaaccccttcttcaagagcaactcaaacttcgcagggagcac
ctatacaattcatttgaggaacttcctggagagtttcagtttgcaacaacaattacatct
aatgaccttgaggaaatacagaaattccttgatgatgctgtcagtgccagttgtgaaggg
ttaattatcaagacccttggcaaagatgctacatatgagccttcaaagcgttcaaacaat
tggttgaaattgaagaaggactacatggacagtattggagattcctttgatttggttccc
attgcagcattccatggtcgtggaaaacgcacaggcgtttatggttcctttcttcttgct
tgctatgatgaacacaatgaggagtatcaaagcatatgtaatataggtactggattttct
gaacaacagctggaagagtgttccaaaaaccttcgtggtaaaataattcttaagccaaag
ccatactatcgatatgctgattcggcgaatccagatgtgtggtttgaaccagcagaggtc
tgggaggtaaaggcggctgacttgagcataagtcctgttcatcgtgctgctaatggcata
gtggatccaaataagggtatttctcttcggtttcctcgtttattaagagtccgtgacgac
aagaacccagatcaagccacaacatctgatcaggttgctgatatgtaccgtgctcagaag
atcaaccatacaaaccatcaagaggaagaggatgatgattaa

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