KEGG   Amycolatopsis orientalis: AORI_1870Help
Entry
AORI_1870         CDS       T02678                                 

Gene name
lig
Definition
(GenBank) DNA ligase (ATP)
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aoi  Amycolatopsis orientalis
Pathway
aoi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aoi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AORI_1870 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aoi03400]
    AORI_1870 (lig)
Enzymes [BR:aoi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AORI_1870 (lig)
DNA repair and recombination proteins [BR:aoi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AORI_1870 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 Read-through
Motif
Other DBs
NCBI-ProteinID: AGM04458
UniProt: R4T1B8
LinkDB All DBs
Position
complement(2007729..2008685)
Genome map
AA seq 318 aa AA seqDB search
MPDAIAPMLATDGDLPTGGWGYEYKWDGYRCCLRVARDGETRLTSRRGLDITATYPDVTG
EALDGHEAVLDGEIVVLDEQGRPSFPLLQTRHLRTPDASLLERSPVHFFAFDVLLLDGDV
LLDEPYEARREVLTSLGAGGRIAIPPGYTDEDISPDQLLDVVRQHGLEGLIAKKLDSRYY
PGKRTRQWVKRAVWHTQEVVVGGWRPGDGRRSGTLGALLLGAHDEAGDLRYIGDVGTGFT
DKVLEDLHARLTPLERKKPPFASEVPRDRARRAHWVEPELVGEVVHRNWTPDGRLRHTTW
RGLRADKTPEDVKLPSSG
NT seq 957 nt NT seq  +upstreamnt  +downstreamnt
gtgccggacgcgatcgccccgatgctggcgaccgacggtgacctgcccaccggcgggtgg
gggtacgaatacaaatgggacggctaccgctgctgcctgcgtgtcgcgcgcgacggcgaa
acgcgcctgaccagccgccgcgggctcgacatcacggcgacgtacccggatgtcaccggc
gaggcgctcgatggtcacgaagccgtcctcgacggcgagatcgtcgtgctcgacgagcag
gggcggcccagcttcccgctgctccagacccggcacctgcgcacgccggacgcgtcgctg
ctggaacgcagcccggtgcacttcttcgccttcgacgtgctgctcctcgacggcgacgtc
ctgctcgacgagccgtacgaggcccggcgcgaggtgctgacgtccctgggcgccggcggc
cgcatcgccatcccaccggggtacaccgacgaagacatctcacccgatcagctgctcgac
gtcgtccggcagcacgggctcgaaggcttgatcgcgaagaagctcgacagccggtattac
cccggcaagcggacacggcagtgggtcaaacgggcggtgtggcacacccaggaggtcgtg
gtcggcggctggcggcccggcgacgggcgtcggtcggggacgctcggcgcgttgctgctc
ggcgcccatgacgaagccggggacctgcggtacatcggcgacgtcgggaccgggttcacc
gacaaggtcctcgaagacctgcatgcccggctcaccccgctggagcggaagaagcctccc
ttcgcttcggaggtcccgcgcgatcgggcgcggcgggcgcactgggtggagccggaactc
gtcggcgaggtcgtgcaccggaactggacaccggacggccggctgcggcatacgacctgg
cggggtttgcgggcggacaagacgcctgaggacgtcaagcttccctcctctggatga

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