KEGG   Amycolatopsis orientalis: AORI_4401Help
Entry
AORI_4401         CDS       T02678                                 

Gene name
lig
Definition
(GenBank) DNA ligase (ATP)
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aoi  Amycolatopsis orientalis
Pathway
aoi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aoi00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AORI_4401 (lig)
Enzymes [BR:aoi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AORI_4401 (lig)
DNA repair and recombination proteins [BR:aoi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AORI_4401 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M SH3_8
Motif
Other DBs
NCBI-ProteinID: AGM06986
UniProt: R4T3J9
LinkDB All DBs
Position
4816144..4817619
Genome map
AA seq 491 aa AA seqDB search
MRDPNRKGVRRPTMAEKLGEYRRKRRPGRTPEPLPDRDGKTGADDLFVIQEHHASSLHWD
IRLERDGVLVSWAVPKGLPMSPDQERLAVHTEDHPMEYLTFEGEIPAGEYGGGTMTIWDT
GRYETLHFNDHKVEVVFHGTRARGKYLFLNVKKDGRDNGWLLKRLDPADPGRKELPSFLA
PMLTKPGRLPSTGEDPEWAYEFDWSGRRTLIRVSGGRITAYDDSGDDVTGLYPEFRGLGE
QLGATEVFLDGEIVVFDGGKPSAEGLGHRARATKNSAKRLTSRYPAFYLVNDLLHLDGRA
CVGTPYVERRELLDELGIAGPHWQVPRYYLGDGGAVARAAREHGLAGVVAKRADSAYHPG
KRTGEWLSITGTLVQQVVLGGWRPGGGSRAGTFGSLLLGVPHEDGLRYIGNCGVGFASDE
LEDLAKQLFRLERKTSPFHSVPDKQARDARWSRPTIVGEVVFGGWTDAGCLRNPRWRGLL
PDVAADEVGLD
NT seq 1476 nt NT seq  +upstreamnt  +downstreamnt
ttgcgtgacccgaaccggaaaggggtgcgccggccgaccatggcggagaaactcggcgaa
taccgccgtaagcgcagacctgggcggactcccgaacccctgccggatcgcgacgggaag
accggggccgacgatctcttcgtcatccaggaacatcacgcgagcagcctgcactgggac
atccgcctcgaacgggacggcgtcctggtctcctgggcggtgccgaagggcctgccgatg
tcaccggaccaggaacgtctggccgtgcacaccgaagaccacccgatggagtacctcacc
ttcgaaggcgagatccccgccggtgaatacggcggcggcaccatgaccatctgggacacc
ggccggtacgaaacgctgcacttcaacgaccacaaggtcgaagtcgtcttccacgggacg
cgggcacgcgggaaatacctgttcctcaacgtgaagaaggacgggcgcgacaacggctgg
ctgctcaaacggctcgaccccgccgaccccggccggaaggaactcccctccttcctcgcc
ccgatgctgaccaaaccgggccgtctgccgtcgaccggcgaagacccggaatgggcttac
gaattcgactggtccgggcgccgcaccctgatccgggtgtccgggggccggatcaccgcc
tacgacgattcaggcgacgacgtcaccgggctgtaccccgaattccgcggcctcggcgag
caactcggtgccacggaagtctttctcgacggggaaatcgtcgtcttcgacggcgggaag
ccgagcgcggaagggctcgggcaccgagcgcgggcgacgaagaactccgcgaagcggctc
acctcgcgctacccggcgttctacctggtgaacgatctcctgcacctggacggccgcgcc
tgtgtggggacgccgtacgtcgaacggcgggaactcctcgacgaactcgggatcgccgga
ccgcattggcaggtcccccggtactacctcggggacggcggcgcggtcgccagggcggct
cgcgaacacgggctggccggcgtcgtcgccaaacgggccgactccgcgtaccacccggga
aagcgtaccggggaatggctttccatcaccggaaccctggtacagcaggtggtgttggga
ggctggcggcccggtggcggcagccgtgcgggcactttcggttcgctgctgctcggcgtc
ccgcacgaagacggcttgcggtacatcggaaactgcggtgtcggcttcgcgagtgacgag
ctggaggatctcgccaagcagctgttccgcttggagcgcaagacatccccgttccactcc
gttccggacaaacaggcacgggacgcgcggtggtcgcggccgaccatcgtcggcgaggtc
gtcttcggtggctggaccgacgcgggctgcctgcgcaatccgcggtggcgtggcctgctg
ccggacgtcgccgccgacgaggtcggactcgactag

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