KEGG   Amycolatopsis orientalis: AORI_4514Help
Entry
AORI_4514         CDS       T02678                                 

Gene name
lig
Definition
(GenBank) DNA ligase (ATP)
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aoi  Amycolatopsis orientalis
Pathway
aoi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aoi00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AORI_4514 (lig)
Enzymes [BR:aoi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AORI_4514 (lig)
DNA repair and recombination proteins [BR:aoi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AORI_4514 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AGM07098
UniProt: R4T958
LinkDB All DBs
Position
complement(4940097..4942163)
Genome map
AA seq 688 aa AA seqDB search
MARKAVPGQAESGVPGWVSPMLASPDGGRLREGPEWAYEYKLDGFRACMRVAADGSTVLT
SRNDVDFTDEFADLTGVLTEALDGRSAVLDGEIVVYNDAGQIDFGLLQERRGRYQTHRSS
ARRGEPFDDVPVRFLAFDLLQLGGTSLLREPYDERRRQLTALPMPDPYRVEVVRGFTFTD
LAADRRTPRHLLDHVKASGHEGLVAKLRTAAYTPGRRSNAWLKHPLTQTTEVIVCGYRPG
QGRLDGLMGGLLLGAHDPDSGDLLYIGDVGTGFTEAERARLQARLDVLERKRHPFAETPP
RADTARAQWVEPELVGEVVFRQFTRGAGRLRHTAWRGLRDDKKPADVLAPQRREPASTGA
RAKTPARKTTREQTQGEPVAEDQPTASPGAKITVQAGDRRLVLSNLDKPLYPDGFTKGEV
INYYSRIAPVLLPHLAGRPVTFIRFPDGVGGEQFFEKNVPHGAPAWLPTVRIARSGSRGS
TEPVTYALLDELAAVVWAANMAALELHVPQWTVDGDGTRRPPDRLVFDLDPGPGTSIVHC
CRVAERLHEALTEDGLTAWAKTSGSKGMQLYCAITTDDPAAPSAYAKKLAQRLARETPDR
VTAVMAKAQRTGRVFIDWSQNNPAKTTVAPYSLRGRDHPTVSTPIAWDEVRGCRRPAQLV
FTADDVLDRVSEHGDLLAGLDATRAALP
NT seq 2067 nt NT seq  +upstreamnt  +downstreamnt
atggcgcggaaggcggtgcccggccaggcggagagcggcgttccagggtgggtgagcccg
atgctggccagtccggacggtggccggttgcgggaggggccggagtgggcgtacgagtac
aagctcgacggcttccgagcgtgcatgagggtcgccgccgacggcagcacggtgttgacc
agccgcaacgacgtcgacttcaccgacgagttcgcggacctgaccggtgtcctaaccgag
gcgctcgatgggcggagcgcggtgctggacggggagatcgtcgtctacaacgacgccggt
cagatcgacttcgggctgttgcaggaacgccgcggccgctatcagacccatcgcagctct
gctcgccgcggcgagccgttcgacgacgtcccggtccggttcctggcgttcgacctgctt
cagctcggcggtacctcgctgttacgcgagccgtacgacgagcgtcggcggcagttgacc
gcgctgccgatgccggatccctatcgggtggaggtggtgcgcgggttcaccttcaccgat
cttgccgcggatcgccggaccccgcggcacctgctcgaccacgtgaaagccagcggtcac
gagggcttggtcgcgaagctccgcaccgccgcctacacccccgggcgccgcagtaacgcc
tggctgaaacacccgctgacccagacgaccgaggtgatcgtctgcggttaccggcccggg
cagggacggctggacggcctgatgggcgggctcctgctcggtgcccacgacccggatagc
ggcgacctgctctacatcggtgacgtcggcaccggcttcaccgaagccgaacgagcccgc
ttgcaggcccggctcgacgtcctcgagcggaagcgacatcccttcgccgagacaccaccc
agggccgacaccgcgagggcgcagtgggtagagccggagctggtgggcgaggtggtgttc
cggcagttcacccgcggcgccggccgcctgcggcacaccgcgtggcgcggcctgcgcgac
gacaagaagcccgccgacgtgctcgccccgcaacgacgcgagcccgcctctaccggagct
cgggcgaagacacctgcccgaaagaccacgcgtgagcagacacaaggtgaaccggtggcc
gaggatcagcccacggcttcaccgggggcgaagatcaccgtccaggccggtgaccggaga
ctcgttctgtccaatttggacaaacctttgtatccggacgggttcacgaagggggaggtg
atcaactactactcgcgtatcgccccggtgctgctgccgcatctggccgggcgtccggtg
acgttcatccgcttcccggacggtgtcggcggggagcagttcttcgagaagaacgtcccg
cacggcgcgccggcgtggctgccgaccgtccggatcgctcgcagcggcagccggggctcg
acagagccggtcacgtacgcgttgctggacgagctcgccgcggtggtgtgggcggcgaac
atggccgcactcgaactccacgttccacaatggaccgtcgacggcgacggcacgcgccgc
ccgccggaccggctggtgttcgacctcgaccccgggccgggaacctcgatcgtgcactgc
tgccgcgtcgccgaacgactgcacgaagccctgaccgaggacgggctgaccgcgtgggcg
aagacgtccggctcgaagggcatgcagctctactgcgccatcaccaccgacgaccctgcc
gccccgtcggcgtacgccaagaaactcgcccaacgcctggcccgggagacaccggaccgg
gtgaccgcggtgatggccaaagcccagcggaccgggcgggtgttcatcgactggtcccag
aacaaccccgccaagaccaccgtcgccccgtactcgctgcgcggccgcgaccatcccacc
gtctccactccgatcgcctgggacgaagtccgcggctgccgccgcccggcacagctggtg
ttcaccgccgacgacgtcctcgaccgcgtcagcgaacacggcgaccttctcgccggactc
gacgccacgcgagcggctctcccatag

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