Isoalcanivorax pacificus: S7S_06395
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Entry
S7S_06395 CDS
T03580
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
apac
Isoalcanivorax pacificus
Pathway
apac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S7S_06395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apac03019
]
S7S_06395
Enzymes [BR:
apac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
S7S_06395
Messenger RNA biogenesis [BR:
apac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
S7S_06395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
AAA_30
ResIII
P-loop_SecA
Sacchrp_dh_NADP
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJD47695
UniProt:
A0A0B4XLY5
LinkDB
All DBs
Position
complement(1430625..1431983)
Genome browser
AA seq
452 aa
AA seq
DB search
MSFSELGLHEAILRAVREQGYETPTPIQRQAIPAVLDGGDLLAGAQTGTGKTAGFTLPIL
QRLIDTPARKPGRIRTLILAPTRELAAQVEESVRVYSRYLKLSSMVMFGGVGMQPQVDRL
RKPLDILVACPGRLLDHAGQGTVDLSGVEILVLDEADRMLDMGFIHDIRRVLKLLPSKRQ
NLLFSATFSDEIKALAEGLLDKPALIEVARRNATAETVAQKIYLVDRERKRELLAELITR
HNWYQVLVFTRTKHGANRLAEQLGKQGITAMAIHGNKSQSARTRALSEFKAGALQVLVAT
DIAARGIDISELPHVVNFELPNVAEDYVHRIGRTGRAGAEGEAISLVCVDEKKLLGGIEK
LIGRALPKATLPGFEPDPSIKPEPIPNGRNRGAAPRGNGGGHAAPRNPRNAAPRQQPRGE
RPKVAASGVSNDAKGDAQRRRRRRRRPAAATA
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttccgaactgggcttgcatgaagccatcctgcgcgctgtgcgcgagcagggc
tatgaaacacctaccccgatccagcgccaggcgatccccgccgttctcgacggcggtgat
ctgctggccggtgcacaaaccggcaccggcaagacggcaggcttcaccctgccgatcctg
caacgattgatcgacacaccggcgcgcaaacccggccgcatccgcacgctgatcctggca
cccacccgggagctggccgcgcaggtggaagagtccgtgcgcgtctacagccgttatctg
aaactcagctccatggtcatgttcggcggtgtcggcatgcagccgcaggtggatcgcctg
agaaagccgctggatattctggtcgcctgccccggccgcctgctggatcacgccggccag
ggcacggtggatctctccggtgtcgaaatcctggtgctggatgaagccgaccgcatgctc
gacatgggctttatccacgacattcgccgggtactgaaactgctgccgtcgaaacgccag
aacctgctgttctctgccaccttctccgatgagatcaaggcactggcagaagggctgctg
gacaagccggcactgatcgaagtggcgcgtcgcaacgccaccgctgaaaccgtggcgcag
aaaatctatctggtcgaccgcgaacgtaagcgcgaactgctggccgaactgatcacccgt
cataactggtatcaggtgctggtgttcacccgcaccaagcacggcgccaaccggctggca
gagcagctcggcaaacagggcatcaccgcgatggcgatccatggcaacaagagccagtcg
gcacgcacccgcgccctgtcggaattcaaggccggggcactgcaggtgctggtagccacg
gacatcgctgcacgcggtatcgatatcagcgaactgccgcatgtggtgaatttcgaactg
ccgaacgtggccgaagactacgtgcaccgcatcggtcgtaccggccgcgccggcgccgag
ggcgaagccatttcgctggtgtgcgtggatgaaaagaaactgctcggcggcatcgagaaa
ctgatcggccgcgcgctgccgaaagccaccctgccaggcttcgaaccggacccgagcatc
aagccggaaccgattcccaacggccgcaaccgcggcgctgcaccgcgtggcaacggcggc
ggccatgccgcaccgcgtaatccacgcaacgccgcaccacgtcagcagccccgtggcgaa
cggccgaaggtcgccgccagtggcgtcagcaacgatgccaaaggcgatgcccagcgccgt
cgtcgtcgccggcggcgcccggcggctgcaacagcctga
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