Candidatus Puniceispirillum marinum: SAR116_2384
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Entry
SAR116_2384 CDS
T01207
Name
(GenBank) DNA-directed RNA polymerase, beta subunit/140 kD subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
apb
Candidatus Puniceispirillum marinum
Pathway
apb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAR116_2384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apb03021
]
SAR116_2384
03400 DNA repair and recombination proteins [BR:
apb03400
]
SAR116_2384
Enzymes [BR:
apb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAR116_2384
Transcription machinery [BR:
apb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAR116_2384
DNA repair and recombination proteins [BR:
apb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAR116_2384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ADE40627
UniProt:
D5BPX5
LinkDB
All DBs
Position
2598574..2602752
Genome browser
AA seq
1392 aa
AA seq
DB search
MASHVSTLDSRKRVRRTFGQLEEITPMPNLIDVQRSSYDTFLQMDVPVPDRIDHGLQETF
KSVFPIGDFAGRSILEFVSYDLEKPKYDVEECQQRGLTFASPLKVTLRLVVWEEDEDTGA
RSIRDIKEQDVYMGDLPLMTSNGTFIVNGTERVIVSQMHRSPGVFFDHDRGKTHASGKLL
FAARVIPYRGSWLDFEFDAKDILNVRIDRKRKLPSTTFMMALPDADSLAYMDACAESGED
VDPTRIVGMSREEILGYFYNAVDYKRDGDGWRYALNPEALKGSQLIRDLVDADTKKVVAK
AGTKMTPRALKKLVEDGVKDVLVPDTDVLGRFIAEDIINMSTGEVYAEAGEEITEELMAR
FVENGNDDISILFIDNVNYGPHLRNTLAADRNTCREEALVDIYRVMRPGEPPTLESSHAL
FQSLFFTSERYDLSSVGRVKMNSRLELDTDDSVRILRKQDVMAILKVLTGLKDGRGDIDD
IDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMGAVEIDTVMPADLINAKPAAAAVRE
FFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETP
EGPNIGLINSLATYAQINRYGFIETPYRKVVEGKVTDEVRYISAMEEGRYTIAQANAELD
AKGVFVGELIPVRRAGEIGLARPTDIELMDVSPKQLVSVAAALIPFLENDDANRALMGSN
MQRQAVPLVKAEAPIVGTGMEARVARDSGVTIVAKRAGVIDQVDATRIVVRASEETAEDV
SPVDIYSLLKFQRSNQNTTVNQRPLVKVGDTVRRGDIIADGPSTEDGELALGRNVLVAFM
PWNGYNFEDSILISERIVRDDVFTSIHIEEYEVMARDTKLGQEEITRDIPNVGEEALKNL
DEAGIVYVGAEVGPSDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGGS
GTVVEVRVFSRRGVEKDERALAIDRAEIDRLGKDRDDERSILERGFYGRMTELFAGQTVA
SGPKGVKAGTKIDDALLDELPKSQWQQIAVKDDNVQKLIEAQIANFESAVAALQARFNDK
VDKLQGGDELLPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRIVPAEDMPYLEDGT
PVDIVLNPLGVPSRMNVGQILETHLGWAARGLGKQVGAAAEAARANADTSKLRDTLSGMY
SAEQYENELAVMDDDQIIEQAEILGRGVPMGTPVFDGAREADVLALLKKAGLSETGQEWL
TDGRTGEVFDRAVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGE
MEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDDFESGIPESFNVLVKELRS
LGLNVDLHEAEY
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgcatgtaagtaccttggatagtcgaaagcgggttcgccgtacgtttgggcag
ttggaagaaatcaccccaatgccaaacctgattgatgttcagcggtcaagttatgatact
tttttgcagatggatgttccggtccctgatcgtattgatcacgggttgcaggaaaccttt
aaatcagtgttcccgattggggattttgctggtcgttcgatacttgaatttgtgtcttat
gatcttgaaaaaccaaaatatgatgtcgaagaatgtcaacagcgtgggctgacctttgcc
tcgccgctgaaagtgaccttgcgactggtggtctgggaagaagacgaagacacaggcgcg
cgttcaatccgcgatattaaggaacaggacgtctatatgggcgatctgccgctgatgaca
tctaacggtacctttattgtgaatggcaccgagcgtgtgatcgtttcacagatgcaccgt
tcgcctggcgtgttctttgaccatgaccgtggcaaaacacatgcttcgggcaaattgcta
tttgctgcccgcgttattccttatcgtgggtcatggctggattttgaatttgatgccaaa
gatattctgaatgtgcggattgaccgcaagcgcaaactgccatctaccaccttcatgatg
gctttgcccgatgctgactcattggcctatatggatgcctgcgccgaatctggcgaagac
gttgacccaacgcgcattgttggcatgagccgtgaagaaattcttggctatttctacaat
gcggttgactataagcgtgatggtgatggctggcgttacgcgctcaaccctgaggcacta
aaaggtagccaactgatacgcgatcttgttgatgccgacaccaaaaaggttgttgccaaa
gcaggcacaaaaatgacaccgcgcgcgctgaaaaagctggtcgaagatggcgttaaagac
gttctggtgcctgatacagatgttctgggccggttcattgctgaagacatcatcaatatg
tcaactggcgaagtctatgccgaagcgggtgaagaaatcaccgaagagctgatggcacgc
tttgtggaaaacggcaatgatgatatcagcatcttgttcatcgataatgtcaattacggt
ccgcatctgcgcaacacgcttgccgctgaccggaatacctgccgtgaagaggcgctggtt
gatatttatcgtgttatgcgtccgggcgagccgccaacattggaaagctcgcatgctttg
ttccagagcctgtttttcacatccgagcgttatgatctgtcatcggttggccgggtgaag
atgaattcacgccttgaactcgatacagatgattctgttcgtatcttgcgcaagcaggac
gtgatggcgatcctgaaagtgctgacaggtctgaaagatggtcgtggcgatattgacgat
attgaccatcttggtaaccgccgggtgcgttcggttggtgaattgatggaaaatcagtac
cgtgtgggtctgttgcggatggaacgtgccattcgcgaacgcatgggcgctgttgaaatc
gacactgttatgcctgccgatctgattaacgccaagccggccgctgccgctgtacgtgaa
ttttttggatcatcgcagctgtctcaatttatggatcagactaaccccttgtctgaaatc
acccataaacgccgtgtatcggcgcttgggccgggcggtctgacccgtgaacgtgcgggc
tttgaagtgcgcgacgtacatccaacgcattatggccggatttgcccgattgaaacgcct
gaaggcccgaatattggtctgattaactcgctggcaacctacgcccagattaatcgttac
ggctttattgaaacaccctatcgcaaagttgttgagggcaaggtcactgacgaagtgcgt
tatatctcggcgatggaagaaggtcgctacacaattgcacaggcgaatgccgaacttgat
gccaagggtgtatttgttggtgaattgattccggtgcgtcgggctggcgaaatcggcctt
gcgcgtccaactgatatcgaactgatggacgtatcgccaaaacagctagtttcggttgct
gcggcgctgatcccgttcctcgaaaatgacgatgcgaaccgtgccttgatggggtcgaac
atgcaacgtcaggctgtgcctctggtgaaagccgaagccccgatcgtgggtactggaatg
gaagcccgcgttgcgcgtgactcgggtgtgaccattgttgccaaacgtgctggtgtgatc
gatcaggtcgatgcgacacgtattgttgttcgtgccagcgaagaaaccgccgaagatgta
tcacctgttgatatatacagcctgctgaaattccagcgttcgaaccagaacaccacggtc
aaccagcgtccgcttgtcaaagtgggtgatacggttcgtcggggtgatatcatcgctgat
ggcccatcaaccgaagacggtgaattggcgcttggccggaacgtgcttgtcgccttcatg
ccgtggaatgggtacaactttgaagattcaatcctgatttctgagcgtatcgtccgtgac
gacgtattcacctcgatacatatcgaagaatatgaagtgatggcacgtgatacaaagctt
ggtcaggaagagatcacccgtgacattcctaatgtcggtgaagaagcactgaagaatctt
gacgaggctggcattgtatatgtcggtgccgaagtcggacctagtgatattctggttggc
aaggtgacaccaaaaggtgaatcaccaatgacaccggaagaaaaactgctccgtgccatt
tttggtgaaaaggcgtccgacgttcgtgatacctcgctgaaactgccacctggcggttca
ggcacggttgtcgaagtgcgtgtgttctctcgtcgtggtgttgaaaaagacgaacgtgcg
ctggccattgaccgcgctgaaatcgatcgtcttggcaaggaccgtgatgacgaacgtagc
attcttgagcgtggtttctacggccgtatgactgaactctttgctggtcagacagtggct
tcaggtccaaaaggcgtgaaagcaggcaccaaaatcgatgatgcgttgcttgatgaactg
ccaaaatcacaatggcagcagatcgctgttaaagatgacaatgtgcaaaagctgatcgaa
gcgcagattgccaactttgaaagtgctgttgcggctttgcaggcacgtttcaatgataag
gttgacaagcttcaaggtggcgatgaattgctacctggcgtgatgaagatggtaaaggtc
tttgttgccgtgaagcgcaagcttcagcctggtgacaaaatggctggccgtcatggtaac
aagggtgtgatctcacggatcgtaccggctgaagatatgccgtatctcgaagatggtacg
ccggtcgatatcgtgttgaacccgcttggtgtgccgtcacgaatgaatgttggtcagatt
ttggaaacccatcttggctgggcggcgcgtggtcttggtaaacaggttggtgcggcagct
gaagcggcgcgtgctaatgcagatacctcaaagcttcgcgataccttgtcaggtatgtat
tctgctgaacaatatgagaatgagctggccgtgatggatgatgatcagatcattgaacag
gccgaaattcttggtcgtggtgtgcctatgggaacgccggtatttgatggtgcgcgtgaa
gccgatgtcttggctctgctgaaaaaggctgggcttagcgaaacaggtcaggaatggctc
accgatggacgtacaggcgaggttttcgaccgggcggttaccgttggctatatctatatg
ctgaaattgcatcaccttgttgatgacaagattcacgctcgttcgattggtccttactcg
ctggttacacagcagccacttggtggtaaggcacagtttggtggacagcgctttggtgag
atggaggtctgggcacttgaagcttatggtgcggcctacaccttgcaggaaatgctcacc
gtcaagtcggatgacgtttcaggccggacaaaggtttacgaggctattgttcgcggtgat
gacgactttgaatctggcattccggaatccttcaatgttttggtcaaagagcttcgctca
cttggtttgaatgttgatttgcatgaggcagaatactag
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integrated database retrieval system
