Anaplasma phagocytophilum Dog2: YYY_00540
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Entry
YYY_00540 CDS
T02752
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apd
Anaplasma phagocytophilum Dog2
Pathway
apd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YYY_00540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apd03400
]
YYY_00540
Enzymes [BR:
apd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YYY_00540
DNA repair and recombination proteins [BR:
apd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
YYY_00540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
AGR81108
LinkDB
All DBs
Position
complement(110366..113785)
Genome browser
AA seq
1139 aa
AA seq
DB search
MDMGSSEIVTGIAPELEDALITEICRNNPKKSFVCVLQDDKPLELLVKTLKFFDSTHNIL
LFPAWDTCTYKHTSPSSYVMTHRVKCLLDLLSVGSKPYILLTTISALIQKVLPKNAVSSS
TLHIEAGKSLSMDELTLHLIEHGYVKSSTVVQEVGSFAVRGDIVDIFQAVNENPVRIYFD
YDIVESIKFFDPDTQITCSEQILDIVIFSASELIKNDGNIARFSEKCSHLRSNNPPLYEA
VVHRQKFEGEEQLLPLLQADALVTLFDYIQEAELVLSEATFSNIKQRIENIWEQNDTQDC
TTHCTSLFLDLQSYEQVLARFHKILLCRFDSAPQSIVQNPATVALTKSTLALLPDLKLQA
RERGCNIFSVTANHMQEAKKQVLLACYSEESMQYLVEKFKHFDMHISRVSSFSDITSKYS
TAILPFQHDVETEDFIIITEHSLLGRQCSIKKARRTVTNNASELTIGDVVVHKDYGVGIF
IALRTLTVCGSCHDFVEIKYRNDDKLFVPVEDTDLITKYGINTDVVLDRLGSSAWHDKQN
KLKKRIDDIAKTLLHAEAMRKLADGSRFLPSSLYIDFCKECPYVETEDQLKAIADVENDL
ARGKVMDRLICGDVGFGKTEIALRAAFLVVNEDITCQVAVLVPTTLLCRQHFLAFKERFK
NYKVNIQQLSKATAKKKQQIREGLEEGSINIIIGTSALLSDSIQFLDLRLLIIDEEQHFG
VQQKEKLRLLKHDVHVLSLSATPIPRTLHMSLSNIKDLSILRTPPIGRTTVEISITHFDE
KTIKTAILNEVNRGGRVFFTCPLIADIEPVLTRLQKLVPEVKIAVAHGGTAPLALDKIMN
DFFDGKFSLLLTTSIIESGIDIPFANTIIIYNADMFGLAQLYQLKGRVGRSTTQGYAYLI
LSNKATSNSPGMKRLEALKSLNSVGSGFALSLQDMDMRGFGNLVGEEQSGNIKEVGIELY
HRMLEEALETCKMTTESSAVSCHNIKVDINANVRIPESYIQELELRMQVYKKISSLKTPE
EISRYSEELKDRFGMPPREVINLLDIIHIKHLCARIGIAEITHFKNHLTLLFGRSFTPQE
SLLKYFVNNAGIFTMQGNSVNVLISAVHANNVTRYLIACLRKINSLLTHTPVSKETKTD
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggatatgggttcctcggaaatagtcacgggcatagctccggaattagaagatgcgctg
atcactgagatatgtcgcaataatcccaaaaaatcttttgtatgcgtgctgcaggatgat
aaacccctggagcttttggtaaaaactctaaaattcttcgatagcacacacaatatacta
ttatttcccgcatgggatacgtgcacatataagcacacttcccctagcagttatgtgatg
actcatagagtaaagtgcttactggatttgttatcagtaggctccaaaccctacatactg
ctaacaactatcagcgctttaatccaaaaagtattaccgaaaaatgccgtatcttcttct
acattgcacatagaagctggaaaaagcttatcgatggacgagctgaccctacatttgata
gagcatgggtacgtgaagtcatcaactgtagtacaagaagtcggtagttttgctgtgcgc
ggagatatagtggacatcttccaagcagtgaatgaaaaccccgtcagaatatactttgac
tatgatattgtagaatcaataaagttcttcgatccagatacccagattacatgcagtgaa
caaattctggatatagtgatcttttccgcatctgaattgataaaaaatgacggaaacatt
gctagattctctgagaaatgctcccatctacgaagcaacaaccctccactttacgaagcc
gtcgtacatcggcaaaaattcgaaggtgaagaacaattactaccgttactacaagctgat
gctttagtaactcttttcgactacatacaggaagcagagcttgttctaagtgaagcaaca
ttttccaacataaaacagcgaattgagaacatttgggaacaaaatgatacgcaggattgc
acaactcactgtacatcgctgtttcttgatttacaaagctacgagcaagttctagcacga
ttccacaaaatactattatgtcgctttgattcagcaccacaaagtatagtacaaaacccc
gctacagtagcgctgacgaagagcacactagcgctgttacctgacctcaaattacaagct
cgcgaaagaggctgtaatattttctcggtaactgcaaaccatatgcaagaagcaaaaaag
caagtgctattggcgtgctatagcgaagaatccatgcagtatcttgttgagaagttcaaa
cacttcgacatgcatatatcgagagtatcaagtttctccgacataaccagtaaatatagt
acagctatactgccattccaacatgatgtcgaaactgaagatttcataatcattacagaa
catagtttactcggtaggcaatgctccataaaaaaagcgagacgcacggttacaaataat
gcttctgagcttactattggggacgttgtcgtacataaagactacggtgtaggtattttc
atcgctctcagaacgttaaccgtttgtgggagctgtcatgatttcgttgagattaagtat
cgtaacgatgacaaactatttgttcccgtagaagatactgaccttataacaaagtacgga
attaatacggatgtagtcctagatagactgggcagctctgcatggcacgacaaacaaaac
aagctgaaaaagcgcatagatgatatcgcaaagaccctcttacatgcagaggccatgcgt
aaattagccgacggaagcagatttctacccagctcattgtatatagacttctgcaaagaa
tgtccttatgtcgaaacagaagaccaactaaaagctatagcagatgttgaaaatgacctt
gcacgcggcaaagtcatggacaggctaatatgcggtgatgttggatttggtaaaacagaa
attgcactacgcgctgcttttcttgtagtcaacgaagatataacatgccaagtggctgtg
cttgtaccgacaactttactatgtcgccagcattttctcgcctttaaagaaagattcaag
aattacaaagtcaatatccaacagctttcaaaagcaactgcgaaaaagaagcaacaaatc
cgggaaggacttgaagaagggagtatcaacatcattataggtacgagtgccctactatcg
gatagcatccagtttttagacctcagattactgattattgatgaagaacaacattttggc
gtacaacaaaaagaaaaactccggctattgaagcatgacgttcatgtactatcgctctca
gccacacctatacctaggacgctacatatgtcactctccaatataaaagacctgagcata
ctccgcacaccccctattgggagaactactgtagagatttctataacacacttcgatgag
aagacaataaaaacagccatacttaacgaggtcaacagaggtggtagggtgttttttaca
tgtcctcttatcgccgatattgagccagtgctaacgcgactacaaaagcttgttccggaa
gtcaaaatagcagtagcccacggaggcaccgcacccctcgcgttagataaaattatgaat
gatttctttgatggcaaattctcccttctcctgacaacgtcgataatagagagcggaata
gatattccatttgctaataccataattatatataatgccgatatgtttggccttgcgcag
ctatatcaattaaaaggacgcgttggccgcagcaccacacaaggatatgcgtatttgata
ctctcaaataaagcaacttctaattctcccggcatgaagaggttagaagcactgaaatct
ctaaacagcgttggttcaggttttgcactatccctacaggatatggacatgaggggattt
ggcaatttagtcggagaagaacaatctggaaacataaaagaagttggcattgagctctat
caccgcatgttagaagaagccttagaaacatgcaaaatgaccacagaaagctctgccgta
agctgccataatataaaggtggatataaatgcaaatgtacgaattcccgagtcatacata
caagaactcgaactcagaatgcaggtctacaaaaaaattagtagcttaaagacacccgaa
gagataagtcgctattctgaggaactaaaagacagatttggcatgcccccacgtgaggta
atcaatctactggatataatacacataaaacatctctgtgcccgcatcggcattgctgaa
atcacccatttcaaaaatcaccttaccctactatttggacgtagttttacaccccaagag
tcactcctaaaatactttgtaaacaatgccggcattttcaccatgcaggggaacagtgtg
aatgtgctaatatccgcagtacatgccaataatgtgactagatatctgatagcatgtcta
agaaaaataaacagtttacttactcatacacccgtatcaaaagagacgaaaacagactag
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