KEGG   Aeropyrum pernix: APE_1094.1Help
Entry
APE_1094.1        CDS       T00023                                 

Definition
(GenBank) ADP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ape  Aeropyrum pernix
Pathway
ape03030  DNA replication
ape03410  Base excision repair
ape03420  Nucleotide excision repair
ape03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ape00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    APE_1094.1
   03410 Base excision repair
    APE_1094.1
   03420 Nucleotide excision repair
    APE_1094.1
   03430 Mismatch repair
    APE_1094.1
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ape03032]
    APE_1094.1
   03400 DNA repair and recombination proteins [BR:ape03400]
    APE_1094.1
Enzymes [BR:ape01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     APE_1094.1
    6.5.1.6  DNA ligase (ATP or NAD+)
     APE_1094.1
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     APE_1094.1
DNA replication proteins [BR:ape03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    APE_1094.1
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     APE_1094.1
DNA repair and recombination proteins [BR:ape03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     APE_1094.1
   NER (nucleotide excision repair)
    Other NER factors
     APE_1094.1
   MMR (mismatch exicision repair)
    Other MMR factors
     APE_1094.1
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: BAA80079
UniProt: Q9YD18
LinkDB All DBs
Position
complement(693527..695335)
Genome map
AA seq 602 aa AA seqDB search
MPFKPVAEAFASMERITSRTQLTLLLTRLFKSTPPGAIGIVVYLIQGKLGPDWKGLPELG
VGEKLLVKAIALAYKATEERVERLYKSVGDLGSVAERLSREYRSRAARAVTLEAFMAGGG
EALTVRRVYNTLYRIAMAQGEGSRDIKLRLLAGLLADAEPVEAKYIVRFVEGRLRVGVGD
ATVLDALAMAFGGGAHARPVIERAYNLRADLGYIAEVVAREGVDALRGVKPQVGVPIRPM
LAERGRDPAEILRKVGGRAVVEYKYDGERAQIHKKDGEVYIYSRRLENITRMFPDVVEMA
RKGLKAGEAIVEGEIVAVDPDNYEIQPFQVLMQRKRKHDIHRVMREVPVAVFLFDALYVD
GEDLTSKPLPERRRRLKEIVVETPLWRLAESIETSDPEELWTFFLKAIEEGAEGVMVKAV
HRDSVYTAGVRGWLWVKLKRDYKSEMMDTVDLVVVGAFYGRGKRGGKLSSLLMAAYDPDR
DVFPTVCKVATGFTDEELDRMNEMLKKHIIPRKHPRVESRIEPDVWVEPALVAEILGAEL
TLSPMHTCCLNTVRPGVGISIRFPRFIRWRDDKSPEDATTTHELLEMYKRQLRRVEEPAE
QV
NT seq 1809 nt NT seq  +upstreamnt  +downstreamnt
atgcctttcaagcccgtggctgaggccttcgcctccatggagaggataacctctaggacg
cagctcaccctcctcctcacaaggctcttcaagtccacgcccccgggggcgatcggtatt
gtggtgtacctgatccaggggaagctggggcccgactggaaggggctgccggagctgggt
gtcggggagaagctgcttgtaaaggccatagccctggcttacaaggccactgaggagagg
gttgagaggctctacaagtctgtaggcgacctggggagtgtggccgagaggctgtcgcgg
gagtaccgctcccgggctgccagggccgtcaccctggaggcgttcatggcgggagggggg
gaggcgctgactgtgaggagggtttacaacacgctgtacaggatagccatggcgcagggt
gaggggagcagggacatcaagcttaggctgctggccggcctcctggcggacgccgagccc
gtggaggcgaagtatattgtgaggtttgtggaggggaggctgagggtgggtgttggggac
gcgaccgtcctcgacgccctcgccatggccttcggcggcggggcccacgcgaggcccgtt
atagagagggcctacaacctcagggccgacctaggctacatagcggaggtcgtggccagg
gagggtgttgatgcgctgaggggtgtgaagccccaggtcggcgttcctataaggccgatg
ctggccgagagggggagggacccggctgagatactcaggaaggtggggggcagggctgtc
gtcgagtataagtacgatggggagagggcgcagatacacaagaaggacggggaggtctac
atctactcgaggaggcttgagaacataaccaggatgttccccgacgtggttgagatggcg
aggaagggcctcaaagccggggaggctatagtcgagggggagatagtggccgtagaccca
gacaactatgagatacagcccttccaggtcctcatgcagaggaagaggaagcacgacata
cacagggtcatgagggaggtgcccgtcgccgtcttcctcttcgacgccctctacgtggac
ggcgaggacctcacaagcaaacccctccccgagaggcgcaggaggctcaaggagatagtt
gtggagacgcccctctggaggctggcggagtccatcgagaccagcgaccccgaggagctg
tggaccttcttcctgaaggccatagaggagggggccgagggcgtcatggtcaaggccgtc
cacagggactcagtctacaccgcgggcgtaagggggtggctgtgggtcaagctgaagagg
gattacaagagcgagatgatggacacggtggacctcgtagtggtgggcgccttctacggc
agggggaagaggggcgggaagctcagcagcctgctcatggccgcctacgacccagacagg
gacgtgttccccaccgtctgcaaggtggccacagggttcacggacgaggagctggacagg
atgaacgagatgctgaagaagcacatcatacccaggaagcacccgagggtagagtcgagg
atagagcctgacgtgtgggtggagcccgccctcgtggcggagatactgggcgccgagctc
accctctcaccaatgcacacctgctgcctcaacactgtgaggccgggggtggggataagc
ataaggttccccaggttcataaggtggagggacgacaagagtccggaggacgcgacaaca
acccacgagctgctcgagatgtacaagaggcagttgaggagggttgaagagccggcggag
caggtgtag

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