Anas platyrhynchos (mallard): 101793534
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Entry
101793534 CDS
T02816
Symbol
SNRNP200
Name
(RefSeq) LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
3.6.4.13
]
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101793534 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
apla03041
]
101793534 (SNRNP200)
Spliceosome [BR:
apla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101793534 (SNRNP200)
Complex C
U5 SnRNP specific factors
101793534 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Sigma54_activ_2
DUF603
Hikeshi-like_C
Motif
Other DBs
NCBI-GeneID:
101793534
NCBI-ProteinID:
XP_038027786
Ensembl:
ENSAPLG00000004313
LinkDB
All DBs
Position
Unknown
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDIYGEVRDEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGINVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLVILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAETVLGNVQNAKDAVNWLGYTYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETMQTYNQLLKPTLSEIELFRVFSL
SSEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTIAPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVFMDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVI
VFVPSRKQTRLTAINILTTCASDVQRQRFLHCAEKDLVPYLDKLNDNTLKETLVNGVGYL
HEGLTAMERRVVEQLFSSGAVQVMVASRSLCWGMNIAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEDRNALLQLSDAQIADVARFCNRYPNIELSYEVVEKESIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATG
THNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtcaccgcccgcagcctgcagtatgagtacaaggcgaactccaacctcgtc
ctccaagccgaccgctcgctcatcgaccggacgcggcgggatgagcccacgggcgaggtg
ctgtcgctggtgggcaagctggagggcacccgcatgggggacaaggcgcagcgcaccaag
ccccagatgcaggaggagcggcgcgccaagagaaggaagcgtgacgaggacaggcacgac
atcaacaagatgaagggctacaccctgctgtccgagggcatcgacgagatggtgggaatc
atctacaagcccaagaccaaggagacgcgtgagacctacgaggtgctgctgagcttcatc
caggccgccctcggagaccagccacgcgacatcctctgcggggctgccgacgaggtgctg
gcggtgctgaagaacgagaagctgcgcgataaggagaggcggaaggagatcgacctgctg
ctggggcagacggacgacacgcgctaccacgtgctggtcaacctgggcaagaagatcacc
gattacggcggcgacaaggaaattcagaacatggatgacaacattgacgagacgtacggc
gtgaacgtgcagttcgagtctgacgaggaggaaggggacgaggacatctatggcgaagtg
cgtgacgaggcgtctgatgacgacatggagggagacgaagctgtcgtccgctgcaccctc
tcagccaacctcgtggcatcaggggagctgatgagctccaagaagaaggacctgcatccc
agagacatcgatgccttctggcttcagcggcagctgagccgcttctacgatgacgccatc
gtgtcccagaagaaggcagacgaagtgctggagatcttgaagaccgcaagtgatgaccga
gaatgtgagaaccagctcgttctgctcctgggctttaacaccttcgacttcattaaagtg
ctgcggcagcatcggatgatgatcctgtactgcactttgctggccagtgcccaaagcgaa
gccgaaaaagaaaggataatggggaagatggaagcggaccctgagctgtccaagttcttg
tatcagctgcacgagacagagaaggaagatctcatccgggaggagcgctcccggcgggag
cgtgtccgtcagtcccggatggacactgacttggagaccatggacctcgaccagggagga
gaggcgctggctccccggcaggtgctggacttggaggacctggtgttcgctcagggcagt
cacttcatggccaacaagcggtgccagctgcccgatggctccttccgcaggcagcgcaag
ggctacgaggaggtgcacgtgccggccctgaagccgaagccttttggctctgaagagcaa
ttggtttccgtggaaaagttgcccaaatatgcccaggctggatttgagggatttaaaact
ctgaaccgtattcagagcaaactctaccgtgcggcgctggagtcggatgagaacctgctg
ctctgtgctcccacgggcgctgggaagacaaacgtggcactcatgtgcatgctgcgagaa
atcgggaagcacattaacatggacgggaccatcaacgtggatgacttcaagattatctac
atcgcacccatgaggtccttggtgcaggagatggtgggcagctttgggaagcgcctggcg
acgtacggcatcaacgtggcggagctgacgggggaccaccagctgtgcaaggaggagatc
agcgccactcaaatcatcgtctgcacgccagagaagtgggacatcatcacgcgcaagggg
ggggagcgcacctacacccagctggtgcggctcgtcatcctggatgagatccacctgctg
cacgatgaccgagggcccgtcctggagtcgctggtagccagagccatccgcaacatcgag
atgacgcaggaggacgtgaggctcgttggattgagcgccaccctccccaactacgaggac
gtggcgacgttcctcagagtggaccctgccaaaggcttgttctattttgataacagcttc
cgcccggtgcccctggagcagacctacgtgggtatcacggagaagaaagccatcaagcgc
ttccagataatgaacgagattgtttacgaaaagattatggagcatgctggaaagaaccag
gtgctggtgttcgttcactccaggaaggagactggaaagactgcccgggccatcagggac
atgtgtctggagaaagacaccctgggcctctttctgcgggagggctcggcctccaccgag
gtgctgaggacagaagctgagcagtgcaagaacctggagctgaaggaccttctgccttac
ggctttgccatccaccacgctgggatgacgcgagtggaccggacgttggtggaggatctg
tttgctgacaagcacatccaggttctggtgtccacagcaacgctggcctggggtgtgaac
ctccccgctcacacggtcatcatcaaagggacgcaggtgtacagccctgagaaggggcgc
tggaccgagctgggcgctctggacatcctgcagatgctggggcgtgctgggaggcctcag
tacgataccaaaggtgaggggatcctcatcacatcccacggtgagctgcagtattacctg
tccctgctcaaccagcagctccccattgaaagtcagatggtgtcgaagctcccagatatg
ctgaatgcagagactgtgctcgggaatgtgcagaatgcaaaggacgcagtgaattggctg
ggctacacctacctgtacatccgcatgctgcgctcccccacgctctatgggatatcccac
gatgacctgaagggagatccgctgctggaccagcgccgcctggacctggtccacaccgca
gccctcatgttggacaagaacaacctggtcaagtacgacaagaagacggggaacttccag
gtgacagagctgggccgcattgccagccactactacatcaccaacgagacgatgcaaact
tacaaccagctccttaagcccaccctgagtgaaattgaactgttccgggtcttctcgctg
tcctcggagttcaggaacatcaccgtgagggaggaggagaagctggagctccagaagctg
ctggagcgagttccaatcccagtgaaggagagcatcgaggagcccagcgccaagatcaat
gtgctcctccaggccttcatctcgcagctgaagctggaaggctttgctctcatggcagac
atggtgtacgttactcagtctgctgggcggctgatgcgtgccatctttgagatagtcctg
aaccgaggctgggcgcagctcaccgacaagaccctcaacctctgcaagatgattgacaag
cgcatgtggcagtccatgtgtcctttgcgccagttcaagaaactgcctgaagaagtggtg
aagaaaatcgagaagaagaacttcccgtttgagcggctctacgacctgaaccacaacgaa
atcggggagctgatccggatgcccaagatgggcaagacaatccacaaatacgtccatctg
ttcccaaagctggagctctctgtccacctgcagcccattacccgctccaccctgaaggtg
gagctcactatcgcccctgacttccagtgggatgagaaggtgcatggctcatctgaagct
ttctggatcctggtggaggacgtggacagcgaggtgatcctgcaccacgagtacttcctg
ctgaaagccaagtacgcgcaggacgagcacctcgtcaccttctttgtgcccgtgttcgag
cccttgcccccgcagtacttcatccgcgtggtctccgaccgctggctctcttgcgagacc
cagctgcccgtttccttccgccacctgatcctccctgaaaaataccctcctccgactgag
ctgctggatctgcagcccctgcccgtgtccgccctgcgaaacagcgccttcgagagcctc
taccaggacaagttccctttcttcaaccctatccagactcaggtgtttaacaccgtttat
aacagcgacgacaacgtgtttgtgggtgcccccacgggaagcgggaagaccatttgtgcc
gaatttgccatcctgaggatgttgctccagaactcggagggacgctgcgtgtacatcacc
cccatggaggccctggcagagcaggtcttcatggactggtatgaaaagttccaggagcgc
ctcaataagaaggtggtcttgctgacgggggagaccagcaccgacctgaagctgctgggc
aaagggaacatcatcatcagcactcccgagaagtgggacatcctgtcccggcgctggaag
cagcggaagaacgtccagaacgtcaacctcttcatcgtggatgaagtgcacctcatcggg
ggcgagaacgggcccgtgctggaggtcatctgctcccggatgcgctacatctcctcgcag
atcgagcggcccatccgcatcgtggccctcagctcgtccctgtccaacgccaaggacgtg
gcgcactggctgggctgcagtgccacctccaccttcaacttccaccccaacgtccgcccc
gtgccgctggagctgcacatccagggcttcaacatcagccacacgcagactcgcctgctc
tccatggccaagccggtgtaccacgccatcatgaagcactctcccaagaagccggtcatc
gtctttgtcccgtcccgcaagcagacgcggctcacggccatcaacatcctcaccacgtgc
gcctcggacgtccagaggcaaaggttcctgcactgcgcagagaaggatctggtgccgtac
ctggacaagctgaacgacaacaccctgaaggagaccctcgtcaacggggtgggctacctg
cacgaggggctgacggccatggagcgacgcgtggtggagcagctcttcagctctggcgca
gtgcaggtgatggttgcctcccgcagcctctgctggggcatgaacatcgccgcgcacctg
gtgatcatcatggacacgcagtactacaacggcaagatccacgcgtacgtggattacccc
atctacgacgtgctgcagatggtgggccacgctaaccgcccactgcaggacgacgagggc
cgttgtgtcatcatgtgccaggggtccaagaaggatttcttcaagaaattcctctacgag
cccctgcccgtggagtcgcacttggaccactgcatgcacgaccacttcaacgctgagatt
gtcaccaagaccatagaaaacaagcaggacgcggtggattacctcacctggaccttcctg
taccgcaggatgacccagaaccccaactactacaacctgcagggcgtgtcccacaggcac
ctgtctgatcacctctccgagctggtggagcagaccctcagtgatctggagcagtccaag
tgcatcagcatcgaggacgagatggacgtggccccgctgaacctggggatgatcgcagcc
tattactacatcaactacaccaccatcgagctcttcagcatgtccctcaatgccaaaacc
aaggtgcgagggctgattgaaatcatctccaacgctgctgagtacgagaacatccccatc
aggcaccacgaggacaacctgctgcggcagctggcccagaaggttccccacaagctgacc
aaccccaaattcaacgacccccacgtcaagaccaacctcctgctgcaggctcacttgtcg
cgcatgcagctgagcgccgagctgcagtcggacacagaggagatcctcagcaaggcgatc
cggctgatccaggcgtgcgtggacgtgctgtccagcaacggctggctcagccccgcgctg
gccgccatggagctggcgcaaatggtgacccaggccatgtggtccaaggactcctacctc
aagcagctgcctcacttcacctcggagcacatcaagcgctgcacggataagggggtcgag
agcgtcttcgacatcatggagatggaggacgaggaccgcaacgcgctgctgcagctctcc
gacgcccagatcgccgacgtcgcccgcttctgcaaccgctaccccaacatcgagctgtcc
tacgaggtggtggagaaggaaagcatccgaagcggggggcccgtggtggtgctggtgcag
ctggagcgtgaggaggaggtcaccggccccgtcatcgctcccctcttcccccagaaacgc
gaggagggctggtgggtggtgatcggcgactccaagtccaacagcctcatctccatcaag
cgcctgacgctgcagcagaaagccaaggtgaagctggatttcgtggccccggccacgggg
acgcacaactacacgctgtacttcatgagcgacgcctacatgggctgcgaccaggagtac
aagttcagcgtggacgtgaaagaagcggagagcgacagcgactccgactag
DBGET
integrated database retrieval system
