Anas platyrhynchos (mallard): 101800540
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Entry
101800540 CDS
T02816
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
apla
Anas platyrhynchos (mallard)
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
apla03036
]
101800540 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
apla03400
]
101800540 (SMCHD1)
Chromosome and associated proteins [BR:
apla03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101800540 (SMCHD1)
DNA repair and recombination proteins [BR:
apla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
101800540 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
Motif
Other DBs
NCBI-GeneID:
101800540
NCBI-ProteinID:
XP_038030626
EnsemblRapid:
ENSAPLG00030008191
LinkDB
All DBs
Position
2:complement(55386128..55465390)
Genome browser
AA seq
2048 aa
AA seq
DB search
MAAAAGGGRGSRKPAPSRSSSSNSSSSNSGGGGGGGGGGGGERSVFLFDRRREQADPEEK
VLSCGRDSYRAFRAAVCQAFGIASDENFVITTTNRKEITEDNFNDLVQDGVTLYLLQSVD
QMLLTATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNAGIRS
IQIKLLFDDSNGKPAVAVIDNGRGMTSKELNNWAVYRLSKFTRQGDFESDHSGYVRPLPV
PRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYS
GYIRNRKPTDSTHITSDDERFLHNLILEERDKESFTAVVITGVQLDHMQYLKNYFHLWTR
QLAHIYHYYIHGPKGNETNAVTKDISPFNNIDIEISLFEKGKVPKIVNLREIKDDMQTLY
INTTADSFEFKALVEGEGIVEGIIRYHPFLYDKETYPDDPCYPSKLNDDDEDYDCFIVEK
GARGKRPIFECFWNGRLIPYTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVST
NKLTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGVT
TRTDLPSKRMQSPWTVYSAIEWDGKTYKTGQLVKTTKTLPIFYGSIENFFLYGDHDGDIF
ATGGEVQIALEPKALYAETKTIPISKLDRTVSDKAVKKYIEDEMARLPDKLSVTWPEGDE
LLPNETRFAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTGNKEII
SHISQHGGKWPYWFKKMENLQKLGNYTLKLQVVLNESSADTYAGRTLPSKTFKFTIIEGK
PEKFSVGLLELPFQVGVPFNIPLELQDEFGHTTQLRDDIKPILEASGLTLQYEKLSAGTN
CVIKGVTARGCVNSYQGKNFNLKVTLPGLKEDTQIFKIRLQPGPPRQLKVKPDSEILKIE
NGTAFPFQVEVLDESGNITAQPKLIVHCKFLGAANLPVYSVDCSNAGTNILTGPVIHVQN
IKKDQMLKAKIEIPSCKDVPPVEKIIKLLPSSRVARLQILSMDGQKAIQIKHQDEINWIA
GDIMRNLIFQMYDEGEREIHITSSMAEKIKVNWTPRINKEMLMQGILPDVKVPTSVKDVR
YCLITYLDDHVSLESAFTVRPLPDEPRHIKCKLKGSNTLQLGEELQGDIDVMITDQYGNQ
VQTVTSACVSSLGVSGPGLDKSNLQITWQESTLTMRVKGIRFKPCLLGSKELCFAWREFS
DFLRVNLIAGSPAKLQIVDWPELEKPVAVINGRELQKPLVLQLCDQWGNPSSEPNVKISL
SKSSNLKIFSSNQQHKTDENGRANLGVISIHAPRGEHILQVKAAYNKITLDCPIITLNVL
PDPEKPVRLNVKYDKNASFPAGGTFPDFMVSVLSEDDNIIKNINPARISMNMWEGQGSGT
RIPIDVTTFSCSKVKDDKEEGFSYFRDKVIPERVGTYSIQFTFAMDKTNVLSSDQIIVEV
VPNDPVRLLPDSLPATPAVSNVRTVTSRTLVKDLHLHVMDEYNNRTGFDLVGRIIAKIKS
PSEDDTEIPQFQGKVSAVEFPFDRGSAEINLVLAENSPGRDSTEYILVFEPDLPALRKPL
EPYRLSFMFYNDYKKQQQMATLTRERDQLSQSIGVYRNWFDTTNQLVAEMRCQVKEAETR
ETHLKNELRKQQIELPQTNTLQYVDSLIKQKMLDQEGVMKQPRRTCTLPNYPKGNQDVLG
KIAHLAQIEDNEAAKVISWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTL
PDWNRPLPHLRNGKICFKPVGNPIFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAAN
HYRKEVVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTFSG
QIDLLQQYRAAVVKLDSVNKDLDLHLRSLNTPEMQKKKQELAEQEKNLMLIEQKLGMTPS
DKVTESLLQSIMLDASDTPIPPKRMRRETVKKLYSSEEWISSPTKKQQQQLLQLSSSELN
GTPRKRKA
NT seq
6147 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggcggggggcggccgcggctcccgcaagccggctccgtcccgcagcagc
agcagcaacagcagcagcagcaatagcggaggaggaggaggaggaggaggaggaggcggc
ggggagcgcagcgtcttcctcttcgaccggcggcgggagcaggcggacccggaggagaag
gtgctgagctgcggcagggacagctaccgagccttccgcgccgccgtctgccaggcgttt
ggcatagcttctgatgaaaactttgttatcaccacaacaaacaggaaagaaattacagaa
gacaacttcaatgatcttgttcaggatggagttactttatatctactacagtcagttgat
caaatgctacttacagcaacaaaggagcgaattgacttcctgccccactatgatacactt
gtcaaaagtggaatgtatgaatattatgccagtgaagggcaaaatcctttgccatttgcc
cttgctgagttgattgacaattctctatcagctacatcccgaaatgctggtattcgaagc
atacagatcaaattgttatttgatgactccaatggaaaaccagctgttgctgtgattgat
aatggaagaggaatgacttctaaagagcttaacaactgggcggtgtacagattgtcaaag
tttacaaggcaaggtgactttgagagtgatcattcaggatatgttcgtcctttgccagta
cctcgtagtttaaatagtgatatctcatattttggagttggcggcaaacaagcagtattc
ttcgttggacagtctgccaggatgataagcaaacctgcggattctcaggatgttcatgaa
cttgtcctttccaaagaggattttgaaaagaaggagaagaacaaagaagcaatatatagt
ggatatattcgaaataggaagccaactgactctacacatatcacaagtgatgatgaaaga
tttcttcataatctaatattagaagaaagggataaagagagtttcacggcagttgtcatt
acaggtgttcaactagatcatatgcagtacttgaaaaactactttcatctttggacaagg
cagctggcacatatctatcactattatatccatggaccaaaagggaatgaaactaatgct
gtaacaaaagacataagccctttcaacaacattgacattgagatttcattgtttgaaaaa
ggaaaagtaccaaagattgtcaatcttagagagatcaaagatgacatgcagacattgtat
ataaatactacagcagatagttttgagtttaaggcgcttgttgaaggagaaggtatagtg
gaaggcatcatccgatatcatcctttcctgtatgataaagaaacataccccgatgatcca
tgttatccatcaaaattaaatgatgatgatgaagattatgactgctttatagtagaaaag
ggtgccagaggaaaaagacctatttttgaatgtttttggaatggaagattaatcccatac
acaactgtggaagattttgactggtgcgctcctccaaagaagagaggattggcaccaatt
gaatgctacaacagaatttctggtgcattgtttaccaatgataagtttcaggtcagcaca
aacaaactcactttcatggatctagaactgaagttaaaagacaagaatactctgttcaca
agaatcttcaatggacaggagcagagaatgaaaattgacagagaatttgctttgtggctc
aaagactgtcatgagaaatatgacaaacagattaaattcacggtctttaaaggagtaacg
acacgtactgatttgccatccaaaagaatgcagagcccttggacagtatattctgcaata
gaatgggatgggaaaacgtacaaaactgggcagctggtgaaaaccactaagactcttcca
atattctatggaagcattgagaatttttttttgtatggagaccatgatggagatatattt
gccactggaggagaggttcaaattgctttggaacctaaggcattgtatgctgaaacaaaa
actattccaatctcaaaacttgacagaacagtgtctgacaaagctgttaaaaaatacata
gaggatgaaatggcaagacttcctgacaaattgtctgtaacatggcctgaaggagatgag
ctattaccaaatgaaacaagatttgctggtacaccaataggggcattaagaatagaaatt
ttgaataaaaaaggagaagcaatgcaaaaacttcctggtaccagtcatggaggttcaaag
aaacttctggttgaactcaaggttattttacattcacctacaggaaataaagagataatt
tcccatataagtcagcatggaggcaaatggccatactggtttaaaaaaatggaaaatctt
cagaaacttgggaactacaccttgaagctgcaagtagtattaaatgaaagtagtgcagac
acatatgcaggaagaactctgccatctaaaacatttaaatttactattatagagggcaaa
ccagagaaattttcagtgggtcttttggagcttccttttcaagttggagtgcctttcaac
attcctttggaattgcaagatgaatttggtcacacaacacagttgagagatgacattaaa
ccaattcttgaagctagtggattgacattgcagtatgaaaaactgagtgcaggaacaaat
tgcgtcattaagggtgtcactgctagaggctgtgtaaatagttaccagggcaagaacttt
aatctgaaggttactcttcctggtttgaaagaagacacacaaatttttaaaataagattg
cagcctggcccaccacgtcagttgaaagtaaaacctgattctgaaattcttaagattgaa
aatggtacagctttcccctttcaggttgaagtattggatgaatcaggcaatataacagca
cagccaaagctgatcgttcattgtaagtttttaggtgctgcaaacttacccgtgtattct
gtggactgcagtaatgcaggaacaaacatcttaactggcccagttatacatgtacagaat
ataaagaaagaccagatgctcaaagcaaagattgaaattcctagttgtaaagatgtgcca
ccagtggaaaagattattaaacttcttcctagcagtcgtgttgcaagactgcagatctta
agtatggatggacaaaaagctattcaaattaaacatcaggatgaaattaattggattgct
ggcgatatcatgcggaaccttatatttcagatgtatgatgaaggagaaagggaaatacac
ataacttcatccatggcagaaaaaattaaggttaactggacacccagaattaataaagaa
atgttgatgcagggaatattacctgatgtaaaagtacctacatcagtaaaagatgtacgc
tactgtctcatcacttaccttgatgaccatgtgtctttggagagtgcgtttacagtcaga
ccacttcctgatgaacccagacacattaaatgcaaattaaaaggatcaaatacattgcaa
ttgggtgaagaactacaaggtgacattgatgtaatgattacagatcaatatggaaatcag
gttcagacagtgacatctgcgtgtgtgagttccctaggagtttctgggcctggacttgat
aaatcgaatttacaaataacttggcaggaaagtaccctaacaatgagagtcaaaggaatt
cgatttaaaccgtgtttacttggaagcaaagaactgtgctttgcttggcgtgaattttct
gactttctcagagtaaatttaattgcaggatcccctgctaaattacaaattgtggattgg
ccagagctcgaaaagcctgttgcagtgattaatggcagagagttgcaaaagccccttgtc
cttcaactgtgtgatcagtggggaaatccatcttctgaacctaatgtcaaaatcagcctt
tcaaagagtagcaacctaaagattttttcttcaaaccagcaacataaaacagatgaaaat
ggtagggctaacctgggagttattagtattcatgcacctaggggagagcacattttacag
gttaaagccgcatacaacaagatcacattagattgtccaataattacattaaatgtcctg
cctgatcctgagaaacctgtccgcttgaatgtgaaatatgacaaaaatgcttcttttcca
gcaggaggtacctttcctgattttatggttagtgttctttctgaagatgacaatattatc
aaaaatattaatccagcgcgtatttctatgaacatgtgggaaggacagggcagcggaact
aggataccaattgatgttacaacgtttagctgtagtaaagtgaaggatgataaagaagaa
ggcttctcttatttcagggataaagtgattccagagagagtgggcacttacagtatacag
tttacttttgcaatggataagacaaacgtgctcagcagtgaccagattatagttgaagtt
gtacctaatgacccagtacgcttgttacctgattctttaccagctactccagccgtttcc
aatgttcgaactgttactagccgtacactggtgaaggatttacacctccatgtaatggat
gaatacaacaaccgcactggatttgacttagttggcagaataatagcaaaaattaagagc
cccagtgaagatgatacagagattccacagtttcaagggaaagtcagtgcagttgagttc
ccatttgacaggggatcagctgaaattaatctagtgctggctgaaaacagtcctggaaga
gatagcactgaatatattcttgtatttgagccagatctgccggctttgagaaagcctttg
gagccataccgtctgtcgtttatgttttacaatgattacaagaagcagcaacagatggca
acacttacaagggaaagagaccagttatctcagtccataggtgtttacagaaattggttt
gatactactaatcagcttgtagctgaaatgagatgtcaggttaaagaagctgaaacaaga
gaaacccacctgaagaatgaactgagaaaacagcagattgaattaccacagacaaacaca
cttcagtatgtggattctcttataaaacaaaagatgttggatcaagaaggagtaatgaaa
cagccaaggcgaacttgtaccctcccaaactatccaaaaggcaaccaagatgttttaggg
aagattgcacatttagcacaaattgaggataatgaagcagcaaaagttatctcctggcat
ttggccagcgacatggactgtgtagtcacattgactactgaagcagctcgcagtattttt
gatgaaactcaaggtcgacaacaagtgctaccccttgattctatttacaagaagacgctc
cctgattggaacaggcctttacctcacttaagaaatggaaaaatctgcttcaaacctgtt
ggaaatcctatatttgccagagatctgttaacgtttccagataatgtagagcactgtcaa
acagtgtttgggatgctcttgggtgacaccatcattatagataacttggatgctgcaaac
cattacagaaaagaggttgtaaaaattacacattgccctactttgctgaccagggaagga
gacagaattcgcagcaatggaaaatttggaggccttcagaataaagcccctccaatggat
aaactcagaggaatggtatttggagcacccatgccaaaactttactctactttctccgga
cagatagaccttcttcagcaataccgtgcagctgtggtgaaacttgatagtgtgaataag
gacctcgatttacacttacggtcacttaacactccagaaatgcaaaagaaaaaacaggaa
cttgccgaacaagaaaagaatctcatgcttatagaacaaaaattgggtatgactccatca
gataaagtcactgaatcgttacttcagtctataatgctagatgcatctgacacccccatc
cctcccaaaagaatgcgaagagaaacggtaaaaaaattgtatagctcagaagaatggatt
tcctctcccacaaagaagcagcagcagcaacttctgcaactatcctcttcagaacttaat
ggaactccacgaaagagaaaggcatag
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