KEGG   Anas platyrhynchos (mallard): 101804830Help
Entry
101804830         CDS       T02816                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
apla  Anas platyrhynchos (mallard)
Pathway
apla03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:apla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    101804830 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:apla03400]
    101804830 (LIG4)
Enzymes [BR:apla01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     101804830 (LIG4)
DNA repair and recombination proteins [BR:apla03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     101804830 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV DNA_ligase_A_C BRCT BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 101804830
NCBI-ProteinID: XP_027299855
Ensembl: ENSAPLG00000001673
LinkDB All DBs
Position
1
AA seq 909 aa AA seqDB search
MASPQPPPRRTVASHVPFADLCATLERMQACKTRPEKTKYFKDFLDSWRKFHHALHQKEK
DVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTPAGS
RGDAGDFAMIAYFVLKPRSPKRGRLTVEQVNELLDAIANNNAARNKGQLKKSLLQLITQS
TALEQKWLIRMIIKDLKLGISQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDPTVSLSDV
SITLFSAFKPMLAAIADVQQIEKQMNNQTFYIETKLDGERIQMHKDGDVYKYFSRNGFDY
TQQFGASPLDGSLTPFIHKVFKDNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMVEDS
DLQTCFCVFDVLMVNDQKLGHEALSKRYEILSNVFTPVTGRIHVVHKKTARTRKEVIDAL
NEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGLRGG
MMSHFLCAIAETPAPNEKPTVFHSICRIGSGYTMKELHDLGLKLAKHWKPYHRRDPPCNI
LCGIEKPEVYIEPCNSVIVQVKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMTLDM
LADLRSRAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKVIGIAEQFKAPDLSNVNKVSNV
FEDVEFCVMTGTGKHSKSELESRIAECGGSVVQNPGPDTYCVIAGAENVRVKNIIASNKY
DVVKAEWLLQCFQSKMLVPWQPAVMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLKEVF
SRMKDNKIMPLDVIAELEERYSWNSCQLSIFRGNTIYVDCYAVVNEPRTKIHGTRLSIRA
LELRFYGAKVVSCLEEGVSHVIIGEDHSRVEEMKALRRTFGKKFKIVSELWVTESVKEGV
PKNENQYLI
NT seq 2730 nt NT seq  +upstreamnt  +downstreamnt
atggcttccccgcagccgcctcctcgcaggacggtcgcctcgcacgtgcccttcgcggac
ctgtgcgccaccctggagcggatgcaggcctgcaagacccggccagagaaaaccaagtac
ttcaaggacttcctggactcgtggagaaagttccaccacgctcttcaccagaaggagaag
gacgtcaccgattcgttttatccggccatgcggctcattctcccgcagctggagagggag
aggatggcgtacgggattaaggaaaccatgctcgccaagctgtacatcgagctgctcaat
ttgcccaaagatgggaaggacgctgcgaagcttttaaactacaggacgcctgccggttcg
cgtggggatgctggagactttgccatgattgcatactttgtcttaaaacctaggagcccc
aaacgaggcaggctgacagtggaacaggtcaacgaactgttagatgccatagctaacaat
aatgctgctagaaacaaggggcagttaaagaaaagccttcttcagttaattacccagagc
acagcgcttgagcaaaagtggctcatccggatgattataaaggatctaaaactgggtatt
agtcaacaaactatattttccatttttcatcccgatgctgttgaattacacaatgtcacg
acagatttggaaaaagtttgtagacaactgcatgatcccactgtctcacttagcgatgtt
tctatcacgttattttctgcctttaagcctatgcttgctgctattgccgatgtccagcaa
attgagaaacaaatgaataaccagacattctacatagaaactaaactggacggtgaacgt
atacagatgcacaaagatggtgatgtgtataaatatttttccagaaatgggtttgactat
actcagcagtttggtgcttccccccttgatggctcattaacaccatttattcataaagta
tttaaagacaacatacaaaattgcattcttgatggcgaaatgatggcttacaatcctgag
acacaaaccttcatgcaaaaaggaaacaaatttgacataaaacgaatggtggaggactct
gatctgcagacctgcttctgtgtgtttgatgtgctgatggttaatgatcagaagttgggt
catgaagcactgagcaaaaggtacgagatcttaagcaacgtatttaccccagtaacaggc
aggatacatgtcgtacataaaaaaactgccagaacgagaaaagaagtaattgatgcttta
aatgaagcaatcgataacagagaggaagggattatggtcaaagatcccatgtccacctac
aagcctgacaaacgtggggaaggctggttaaaaatcaagccggaatacgtcaatgggctg
atggacgagctcgaccttctgatagttggtggttactggggaaagggcttacgtggtgga
atgatgtctcattttctgtgtgcgattgcagagactcctgctccaaacgaaaaacctact
gttttccactctatttgtcgcattggctctggctacactatgaaggaattgcatgatctg
ggtttgaaactggctaaacactggaagccctaccataggagggaccctccctgtaacatt
ttgtgtggcattgaaaaacctgaagtgtacattgaaccttgtaactccgtcatcgttcag
gtcaaggcagctgagattgttaacagcgatatgtacaaaactgactgtaccttgagattc
ccccgaattgagaaaataagagaggacaaagaatggtatgaatgcatgactttggacatg
ctcgcagatctcagaagtagagcagaagggaagctggcgtccaagcaccttcatattgac
gaatatgatgagccgcaagagaagaaaaggaaaactgtatcgaaggtgaagaaggtaatc
ggaatagccgagcaatttaaagctcctgatctttctaatgtaaacaaggtttcaaatgtg
tttgaagatgtagagttttgtgttatgacaggtacaggaaaacactccaaatctgaactg
gaaagccgaatagccgaatgtggtgggagtgtggtacagaaccctggaccggacacttac
tgtgtcatcgcaggagctgagaacgtcagagtgaaaaacatcattgcttccaacaaatac
gatgtggtgaaggcagagtggcttctgcagtgttttcagtccaaaatgcttgtgccttgg
cagccagccgttatgattcacatgtctcctgacactaaagaacattttgctcgtgagtat
gattgctatggagacagctacacagcagatacagatgttgcacaactcaaggaagtattc
tcaagaatgaaggataataaaataatgcccttggacgtgattgctgagttagaagaacgt
tactcatggaacagctgtcaactcagtatattcagaggaaacactatttatgtggactgt
tatgctgttgttaatgaacccagaaccaaaatccacggaacaagactatcaattagagct
ttggagctccgtttttatggggcaaaagtagtctcttgccttgaagaaggtgtctcccat
gtcattataggagaagatcattctcgggtagaagaaatgaaagcactcaggagaacattt
gggaaaaaatttaagattgtatctgagctgtgggtaacagagtcagtgaaggagggagtc
ccaaagaatgaaaatcagtacttgatttaa

DBGET integrated database retrieval system