Acanthaster planci (crown-of-thorns starfish): 110980177
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Entry
110980177 CDS
T05078
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
3.6.4.13
]
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110980177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aplc03019
]
110980177
03041 Spliceosome [BR:
aplc03041
]
110980177
03009 Ribosome biogenesis [BR:
aplc03009
]
110980177
03016 Transfer RNA biogenesis [BR:
aplc03016
]
110980177
Messenger RNA biogenesis [BR:
aplc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110980177
Spliceosome [BR:
aplc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110980177
Complex C
U4/U6.U5 tri-SnRNP related factors
110980177
Ribosome biogenesis [BR:
aplc03009
]
Eukaryotic type
Pre-60S particles
Helicases
110980177
Transfer RNA biogenesis [BR:
aplc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110980177
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
DUF3379
AAA_22
ATPase_2
Motif
Other DBs
NCBI-GeneID:
110980177
NCBI-ProteinID:
XP_022092267
UniProt:
A0A8B7YI28
LinkDB
All DBs
Position
Unknown
AA seq
1023 aa
AA seq
DB search
MADAFGGDLFTVFEDDDQTAKKRKRNPVLDGRKSSFLEGNQQLDAGDHEVPEYTTGKKPK
LSLTADELNLAEILPQVKCQTVESIEGCSHEVALPLNEEYEPLKPSGNKPAKEYPFILDP
FQKEALKCLENNQSVLVSAHTSAGKTVVAEYAIAMSLRDKQRVIYTTPIKALSNQKYREM
YEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEIMREVAWVIFDEIHYMRDKNR
GVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTEYRPVPLQHYIFP
AGGDGLHLVVDEKGEFRQDNFGAAMSVLRDSGDAAKGDSMNRGRKGGTKGPSNIFKIVKM
IMERMFQPVIVFSFSKKECEAYAMQMSKLDFNSSSEEKALVTEVFNNAIDCLSDDDKKLP
QVENVLPLLKRGIGIHHSGLLPILKETIEILFSEGLIKALFATETFAMGLNMPARTVVFT
NARKFDGKDFRWISSGEYIQMSGRAGRRGLDDKGIVILMIDEKMSPGVGKNILQGQPDPL
NSAFHLTYNMVLNLLRVEGINPEYMLERSFHQFQNYSVIPELFDKLKKLEEEYNQMEIPQ
EESVEAYYKIRQQLNKLGREIQAFITKPKYCLPFLQPGRLVKVKNEADEFGWGVVINFRK
KANQKMNSPRDDPLYIAEVLLNCSKESIKNAATDSAKPPMAGEKGEMAVVPVLLNLITHI
SSVRLYLPKDLRPLDNRQSVGKSVQEVQRRFPDSLPLLDPIEDMGIKDENLRKVVEKIEA
FEERMYSHPLHKSPDVQKLYSQYEQKAKLASEVKAAKRELKRAKTVIQLEELKCRKRVIR
RLGYATVADVIEMKGRVACEISSADELLLTELIFNGVFNSLKPEQITALLSCFVFEEKSK
NVPRLSEQLSGPLRQMQDSARRIAKVSAEAKLAVEEEDYVESFKPQMMDVVFAWANGSNF
AEICKMTDVFEGSIIRCMRRLEELLREMCHAAKAIGNTELENKFASGIAKIKRDIVFAAS
LYL
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgcgtttggaggcgatttgtttactgtctttgaagacgatgatcagaccgcc
aagaaacgaaagcgcaacccagtcctggatggccggaaatcgagctttttggaaggtaat
caacagcttgatgcaggtgaccatgaggtaccagagtacacaacaggaaagaagcccaag
ctttctctgactgcagatgaactcaatctggcagaaatcctaccccaggtgaagtgtcag
acagtagaatctattgaaggttgtagtcacgaggtggctctacctcttaatgaagaatat
gaaccactcaaaccctcaggaaacaaaccagcaaaggagtatccattcattctggatcct
ttccagaaagaagctctgaagtgtcttgagaataaccagtcagtcttggtctcagctcac
acgtctgcaggaaagacagtagttgcagagtatgccattgcaatgtcactacgtgacaag
caacgtgtcatctacaccacccccatcaaggctctgagcaatcaaaaatatcgtgagatg
tatgaggaattccaagatgtaggattgatgacaggtgatgttaccatcaacccaacagca
agctgcctcatcatgacaacagagattttgcgaagcatgctgtatcgaggttcagagatc
atgcgagaggttgcatgggtaatatttgatgagatacactatatgcgagacaagaataga
ggtgttgtctgggaggagactatcatacttctgccagacaatgttcactatgtcttcctg
tcagcaactatacccaatgctagacagtttgcagaatggatctgtcatctgcataaacag
ccttgccatgttgtgtacactgagtacaggccagtacctttgcagcattacatctttcct
gcgggtggtgatggactgcatctggttgttgatgaaaaaggagagtttcgtcaagataat
tttggtgctgcaatgtctgtcttgagggattctggtgatgctgctaagggtgactcaatg
aacaggggacggaaagggggaacaaaaggtccctccaatatcttcaagatagtcaagatg
atcatggaacggatgtttcagccagtcattgtcttcagtttcagcaagaaagagtgtgag
gcatatgccatgcaaatgtccaaactggacttcaacagctcgtcagaggagaaggcattg
gtgacagaagtctttaacaatgctatcgattgcctctctgatgatgacaagaaattacca
caggtggaaaatgttcttcctcttttgaaacgtggcattggcatccatcactcaggactt
ctaccaatccttaaagagaccatcgagattctcttttctgagggcctcatcaaggcattg
tttgctactgaaacatttgctatgggactcaatatgcctgcccgcaccgtggtcttcaca
aatgctcgcaagtttgatggcaaggatttcagatggatttcatcaggggagtacattcag
atgagtgggagggctgggaggcgtggtttagatgacaaaggcatcgttatcttgatgatc
gatgaaaagatgagcccaggagttggcaagaacatcctgcagggccagccagatcctcta
aacagtgccttccatttgacatacaacatggttctcaatctactgcgagtagagggcatc
aatccagaatacatgttggaaaggtctttccatcagttccagaactattctgtcatccca
gaactctttgacaaattgaagaaacttgaggaagaatacaatcaaatggagatccctcag
gaagagagtgtggaggcttactacaagatcagacaacaactcaacaagctgggacgcgag
atacaagccttcattactaagcccaagtattgcttgccattcctacaacctggacggcta
gtcaaggtcaagaatgaagctgatgagtttggatggggtgtcgtcattaacttcaggaag
aaggccaaccaaaagatgaacagtccacgtgatgacccactttatattgcagaagttctg
cttaattgttccaaagagagtattaagaatgctgccacagactctgccaagccacccatg
gctggagagaagggagaaatggctgtggttccagtgttactgaatttaatcacacatatc
agcagtgtaaggttgtatttaccaaaggacctcagaccacttgataacaggcagagtgtg
ggcaagtcagtacaggaagttcagagaagatttcctgatagtctgccgcttctggaccca
attgaggacatgggcatcaaagatgaaaatcttaggaaggttgtggagaaaattgaagca
tttgaggagagaatgtacagccatccattacacaaaagccctgatgtacagaagctatac
agccagtatgaacagaaagcaaagcttgcatcagaggtcaaagctgcaaagcgtgagctg
aaacgagctaagacagtgattcagttggaggagttgaaatgtaggaaacgagtcattcgc
agactaggctatgccactgtggctgatgttattgagatgaaaggacgagtagcatgtgaa
atcagcagtgctgatgaactactcctgacagagcttatctttaatggtgtcttcaatagc
ctgaaaccagagcagattactgcccttctgagctgttttgtttttgaggagaaatccaag
aatgtacccagattatctgagcagctgtcaggccctctgaggcaaatgcaggactcagcc
cgtagaatagccaaagtgagcgctgaggctaaactagctgtggaagaagaagattatgtg
gaatccttcaagccacagatgatggatgtagtgtttgcttgggccaatggatccaacttt
gctgaaatctgcaagatgactgatgtatttgagggcagtatcatccgttgtatgagaagg
ctagaagagctactgagagagatgtgtcatgctgctaaggctattggaaacacagaactg
gaaaacaagtttgctagtggtattgccaagatcaaaagagacattgtgtttgctgctagt
ctctacttgtaa
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integrated database retrieval system
