KEGG   Accumulibacter phosphatis: CAP2UW1_4078Help
Entry
CAP2UW1_4078      CDS       T00966                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
app  Accumulibacter phosphatis
Pathway
app03030  DNA replication
app03410  Base excision repair
app03420  Nucleotide excision repair
app03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:app00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CAP2UW1_4078
   03410 Base excision repair
    CAP2UW1_4078
   03420 Nucleotide excision repair
    CAP2UW1_4078
   03430 Mismatch repair
    CAP2UW1_4078
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:app03032]
    CAP2UW1_4078
   03400 DNA repair and recombination proteins [BR:app03400]
    CAP2UW1_4078
Enzymes [BR:app01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CAP2UW1_4078
    6.5.1.6  DNA ligase (ATP or NAD+)
     CAP2UW1_4078
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CAP2UW1_4078
DNA replication proteins [BR:app03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CAP2UW1_4078
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CAP2UW1_4078
DNA repair and recombination proteins [BR:app03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CAP2UW1_4078
   NER (nucleotide excision repair)
    Other NER factors
     CAP2UW1_4078
   MMR (mismatch exicision repair)
    Other MMR factors
     CAP2UW1_4078
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: ACV37320
UniProt: C7RND4
LinkDB All DBs
Position
complement(4656006..4656848)
Genome map
AA seq 280 aa AA seqDB search
MRWNGVVNALTLVALAGGGWPVLGEPLPLLLAETEQGQADVRLYLVSEKLDGVRAFWDGQ
RLLTRSGHAIAAPEWFVAGFPRQALDGELWIGRGEFERLSGIVRRQTADEAAWRDVRYLV
FELPQAPGTFRQRARALHELVSSAGVPWLRAVEQIEIGSRQALERKLDEVVLAGGEGLML
HRADAAYVTGRSDALLKLKRWLDAEATVIGHQPGRGKYAGMLGALRVRTAGGVEFMLGTG
LSDALRRDPPPIGTQITFRYRELTDQGRPRFASFQRLRDL
NT seq 843 nt NT seq  +upstreamnt  +downstreamnt
atgcgctggaatggggtggtgaacgcgttgacgctggtcgctctggcgggcggtggctgg
ccggtccttggcgagcccttacccctgttgctggccgagaccgagcagggccaggccgac
gttcggctctacctggtcagcgagaagctcgacggcgtgcgcgcgttctgggatgggcag
cgtttgttgacgcgcagcggtcatgcgattgcagctcccgagtggtttgtcgcgggtttc
ccgaggcaggcgctggacggcgagttgtggatcgggcgaggcgagttcgagcggctgtcc
ggaatcgttcgccgacaaacggcagacgaggcggcgtggcgcgacgtccgctacctggtt
ttcgaactgccgcaggcgccggggactttccgccagcgagcgcgggccctgcatgaactg
gtaagcagcgccggcgtgccctggttgcgcgcggtcgagcaaatcgagatcggcagccgt
caggcgctcgaacgaaagctggacgaagtcgtcctggctggcggcgaggggctgatgttg
caccgcgccgacgccgcctacgtcaccgggcgcagcgatgccttgctgaaattgaagcga
tggctcgacgccgaggcgacggtgatcggccatcagccggggcggggcaagtacgccggg
atgctcggcgcgttgcgggtgcgtaccgccggtggcgtcgagttcatgctgggcaccggc
ctgagcgacgcgttacgccgcgatccgccaccaatcgggacgcagatcacgttccgctat
cgcgaactgaccgatcaggggcggccgcgcttcgcctccttccagcgcctgcgggatctg
tag

DBGET integrated database retrieval system