KEGG   Auxenochlorella protothecoides: F751_2377
Entry
F751_2377         CDS       T04132                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
apro  Auxenochlorella protothecoides
Pathway
apro03020  RNA polymerase
apro03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:apro00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    F751_2377
  09124 Replication and repair
   03420 Nucleotide excision repair
    F751_2377
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:apro03021]
    F751_2377
   03019 Messenger RNA biogenesis [BR:apro03019]
    F751_2377
   03400 DNA repair and recombination proteins [BR:apro03400]
    F751_2377
Transcription machinery [BR:apro03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     F751_2377
Messenger RNA biogenesis [BR:apro03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     F751_2377
DNA repair and recombination proteins [BR:apro03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      F751_2377
SSDB
Motif
Pfam: SHS2_Rpb7-N S1 Tugs
Other DBs
NCBI-GeneID: 23613768
NCBI-ProteinID: XP_011397548
UniProt: A0A087SG06
LinkDB
Position
Unknown
AA seq 173 aa
MFYLLELNRELEVQPRHFGPKLAQEVEKRLRQEVEGTCSGIYGFVLAVLNLESLGKARIR
EGAGSAVFNVTYKCITFKPHKGEVLDVVVTTVNKMGFFAEAGPLQVFVSNHLIPEAFEFS
SIHEPCYATPDGEQRIAAASDVRLRIVGTRIDANEIFAVGDIKGDYLGVLQMT
NT seq 522 nt   +upstreamnt  +downstreamnt
atgttctacctgctggagttgaaccgggagctggaggttcagccgcggcattttgggcca
aaactagcgcaagaagtagagaaacgcctcagacaggaggttgagggtacctgcagcggc
atatatggctttgtgttggcagtactgaacctggagagcctgggaaaggcccgaatccgc
gagggtgctggatcggcggtgttcaatgtcacctacaagtgcatcacctttaagccacac
aagggggaggtgctggacgtggtagtgaccacagtgaacaagatgggcttctttgcggag
gcgggaccgcttcaggtcttcgtgtccaaccatttgatcccggaggcttttgagttctcc
agcatacacgagccgtgctacgccaccccggatggggagcagaggatagccgccgcctcc
gatgtgcggttgaggatcgtgggcacccgcatcgatgccaacgagatttttgcggtggga
gacatcaagggcgactacctgggagtactacaaatgacctga

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