KEGG   Auxenochlorella protothecoides: F751_3039
Entry
F751_3039         CDS       T04132                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
apro  Auxenochlorella protothecoides
Pathway
apro03030  DNA replication
apro03410  Base excision repair
apro03420  Nucleotide excision repair
apro03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:apro00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    F751_3039
   03410 Base excision repair
    F751_3039
   03420 Nucleotide excision repair
    F751_3039
   03430 Mismatch repair
    F751_3039
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:apro03032]
    F751_3039
   03400 DNA repair and recombination proteins [BR:apro03400]
    F751_3039
Enzymes [BR:apro01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     F751_3039
    6.5.1.6  DNA ligase (ATP or NAD+)
     F751_3039
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     F751_3039
DNA replication proteins [BR:apro03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    F751_3039
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     F751_3039
DNA repair and recombination proteins [BR:apro03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     F751_3039
   NER (nucleotide excision repair)
    Other NER factors
     F751_3039
   MMR (mismatch excision repair)
    Other MMR factors
     F751_3039
SSDB
Motif
Pfam: DNA_ligase_A_N DNA_ligase_A_M DNA_ligase_A_C
Other DBs
NCBI-GeneID: 23614430
NCBI-ProteinID: XP_011397209
UniProt: A0A087SF17
LinkDB
Position
Unknown
AA seq 643 aa
MASSRQRDISSFFGGARVKPAAVSLAATSPVRQASSEPKPEPCAEADEGSPSPAAAAAKF
AKVEGVGLGSIKAAAEHADFDLSKVITWTLGSPVPFGFLADTFEAIAEESKRLVITRILI
GAFRAVIASTPADLLPMIYLCTNRVAPAHVGLELGIGDATLIKALAQVTGKKEAAVRAEY
GQCGDLGAVAAAARGLQKTMFPPPRLTVPGVLRAFRDVAAAEGSGSQDRKKAMIVKLLVA
ARDNEAGYVMRALQGKLRIGLAEQTVLVALAHAAVLSSEAARAVKLAYSQCPSYDDLVPA
LLAHGPLRLPDHIYSRNSEDNTGKYPDIAALLPRMIKPGVKSAVLDAEAVAYDRVEKRVL
PFQVLSTRARKDVSLASIKVAVCVFVFDCLYLDGRVLVQESLTTRREAMRAALSEAPGEL
QFATAKVSTDVEELSAFLDDAVDAGTEGLIVKTLGDTYEPSRRSSHWLKLKKDYLEGVGD
TFDLVPIGAWHGRGKRTGMYGSYLLAVYDPENEEYQTISKIGTGFSEELLKQLAESQKEL
VIPGPRKYYNWGETLEPDVWFEPKAVWEIKAADLSISPVHKAATGLVDATKGISIRFPRL
MRVRDDKGPEDSTSPAQVAEMYQAQAVVQQNSKASKPDVDDDY
NT seq 1932 nt   +upstreamnt  +downstreamnt
atggcatcgtcgcgacagcgtgacatatcctccttctttgggggcgcacgtgtgaagcca
gccgctgtgtcgctggcggccacgtcacctgttcggcaggcgtcatctgagcccaagcca
gagccttgcgccgaggctgatgagggcagccccagcccagcagcagcagctgccaagttt
gcaaaggtggaaggtgtgggcttgggctccatcaaggctgccgccgagcatgccgacttt
gatctgtccaaggtcattacttggaccctcggcagcccggtgccctttggcttcctggcc
gacacctttgaggccatcgcggaggagagcaagcgtctggtgatcacgcgcatcctgatc
ggcgccttcagggcggtcatcgccagcacccccgccgatctcctgcccatgatctacctg
tgcaccaaccgggtggccccggcgcatgtgggcctggagctgggcatcggcgacgcgaca
ttgatcaaggcgctggcgcaggtgacggggaagaaggaggcggcggtgcgggccgagtac
ggccagtgcggcgatctgggcgcggtggcggccgcagcgcgcggcctgcagaagaccatg
ttcccgccgccgcggctgacggtgccgggcgtgctccgcgccttccgtgacgtggctgct
gcggagggctctggcagccaggaccgcaagaaggccatgatcgtgaagctgctggtggcg
gcgcgcgacaacgaggccgggtacgtcatgcgcgcgctgcagggcaagctgcgcatcggc
ctggccgagcagaccgtgctggtcgcgctggcgcacgccgccgtgctttcctccgaggcg
gctcgcgcggtgaagctggcctactcccagtgccccagctacgacgacctggtgccggcg
ctgctggcgcatggcccgctgcgcctgcccgaccacatctactcgaggaactcggaggac
aacaccggcaagtacccggacatcgcagccctgctgccgcgcatgatcaagcccggggtc
aagtcagcggtgctggatgccgaggccgtcgcctacgaccgcgtggagaagcgtgtgctc
ccattccaggtgctgagcacgcgtgcgcgcaaggacgtgtccctggccagcatcaaggtg
gcggtctgcgtcttcgtcttcgactgcctgtacctggacggccgggtgctggtgcaagag
tcgctgacgacgcggcgcgaggccatgcgcgccgcgctgagtgaggcccccggcgagctc
cagttcgccacggccaaggtgtcgacggacgtggaggagctgagtgccttcctggacgac
gcggtggatgcggggacggaggggctgatcgtgaagacgctgggcgatacctacgagccc
agccgccgctccagccactggctgaagctgaagaaggactacctggagggggtgggggac
accttcgacctggtgcccatcggcgcctggcacggccgcggcaagcgcacgggtatgtac
ggctcctacctcctggcggtgtacgacccggagaacgaggagtatcagaccatcagcaaa
atcggcaccggcttcagtgaggagctgctgaagcagctggcagagtcccagaaggagctg
gtcatccccggtccgcgaaagtactacaactggggcgagacgctggagccagacgtctgg
ttcgagcccaaggcggtgtgggagatcaaggcggcagacctgtccatctccccggtgcac
aaggctgccactgggctggtggacgccaccaaggggatctccatcagattcccgcggctc
atgagggtgagggatgacaaggggccggaggactccaccagccctgcccaagtggcggag
atgtatcaggcccaggccgtggtccagcagaacagcaaggcatccaagcctgatgtcgat
gatgactactag

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