Lancefieldella parvula: Apar_1111
Help
Entry
Apar_1111 CDS
T00983
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apv
Lancefieldella parvula
Pathway
apv03030
DNA replication
apv03410
Base excision repair
apv03420
Nucleotide excision repair
apv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Apar_1111
03410 Base excision repair
Apar_1111
03420 Nucleotide excision repair
Apar_1111
03430 Mismatch repair
Apar_1111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apv03032
]
Apar_1111
03400 DNA repair and recombination proteins [BR:
apv03400
]
Apar_1111
Enzymes [BR:
apv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Apar_1111
DNA replication proteins [BR:
apv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Apar_1111
DNA repair and recombination proteins [BR:
apv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Apar_1111
NER (nucleotide excision repair)
GGR (global genome repair) factors
Apar_1111
MMR (mismatch excision repair)
DNA ligase
Apar_1111
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Apar_1111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
HHH_8
5_3_exonuc
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
ACV51539
UniProt:
C8W7U8
LinkDB
All DBs
Position
complement(1255728..1257845)
Genome browser
AA seq
705 aa
AA seq
DB search
MAALSPKETARAAELNRILNHAAYAYYALDNPELTDAEFDRLLIELQQLEAAYPELITED
SYTQRVGGYVSEQFEPVQHAARMYSMDDAMNLEELDAWLSRTDEALGASPTNPVAYTCEL
KIDGLGVALTYRDGQFVRAATRGDGSTGENVTANVLTISDVPRELALAGLERVENRGLNQ
SIEVRGEVYMPKHSFIRLNEDADAAGKQPFANPRNAAAGSLRQKDPKITAHRDLETFIYA
VADEGPLDVHSQWEFLNWLRSCGFNVNPHARRCLNAQEVHDFCAQALEQRGDLNYDIDGV
VVKVDSFASQEALGFTSRAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEFDPVT
VAGSTIARATLHNLDEIRRKNVREGDTIIVHKAGDVIPEVVGPVLNLRPADAVEFQMPAT
CPSCGSPVIQEEGEVAFRCVSIDCPAQAVERLIHWGSRKAMDIDGLGDELINRMVEEGVL
SDVADFYDKLTEEMLACMPTGRVYDTDTADHLSGDSIPVGHTIAKKVMAKVEESKTRGLG
RVLFGIGMRHVGANVAELLAQEFGSIQALATAPVEKIAEIPGIGPKIAESVHEFFSIPEN
VAVIERLRQAGVVLEEEKTENELPQTLAGLTFVLTGTLEHFTRDEAGAQLKAMGAKVSGS
VSKKTSFVVAGEAAGSKLTKAESLGVPVLDETALQQILETGQAPA
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggcagcactttcgccaaaagagaccgctcgtgcagcagagctcaataggatcttgaat
catgcggcatatgcttattatgcccttgataatcctgagctgactgacgctgaatttgat
cgtctccttattgagcttcaacagcttgaggcagcctatccagagcttattactgaggat
agctatacgcagcgcgtaggcggttatgtttctgagcagtttgagcctgttcagcatgct
gctcgtatgtattccatggatgacgctatgaatctggaagagctggatgcatggctttct
agaaccgatgaagctctgggtgcttcaccaactaatcctgtggcatatacctgtgagctt
aagattgatggtttgggtgtcgcactgacctatcgtgatggtcagtttgtacgcgctgct
acgcgaggtgacggaagtactggagaaaacgttacggcaaacgttttgactatctccgat
gttccacgagagcttgcgcttgctggtcttgagcgggttgagaatagaggtcttaaccag
agcattgaagtacgtggtgaggtttatatgccaaagcattctttcattcgtttgaatgag
gatgcggacgctgctggtaaacagccttttgccaatccaagaaatgctgctgctggatct
ttgcgccagaaggatccaaagattaccgctcatcgagaccttgagacttttatctatgca
gtagctgatgagggtcctcttgatgttcacagtcagtgggagtttttgaattggcttcgt
agttgtggttttaatgttaaccctcatgctcgtcgatgtcttaatgctcaggaggttcat
gatttctgcgctcaagctcttgagcagcgaggagatcttaactacgacattgatggcgtg
gtagtaaaggttgattcatttgccagccaagaggctctaggatttacttctcgcgctcct
cgttgggctattgcatttaaatttccaccagaggaaaagcagactgttttgcgagaaatt
cgtattcaggttggtcgtactggtgtacttacacctgttgccgagtttgatcctgtcact
gttgcaggttctaccattgcccgtgcaacccttcataatcttgacgaaattcgccgcaag
aatgtgcgcgagggcgataccattattgtccacaaggcgggagatgtcattccagaggtt
gtaggaccagttttaaatcttcgacctgcagatgctgttgagttccagatgccagctacc
tgcccaagctgtggtagccccgttattcaagaagagggagaggtggccttccgctgcgtc
tctatcgattgccctgctcaagcagttgagcgtttgattcactggggaagtcgaaaggct
atggacattgacggccttggtgatgagcttattaaccgtatggttgaagagggcgttctt
tctgacgtagctgacttttatgacaagcttactgaagagatgctggcatgtatgcctaca
ggtcgcgtctatgataccgatactgcagatcacctttctggcgatagtattcctgtgggt
cacactattgctaagaaggttatggcaaaggttgaggaatcaaagacgcgaggtcttgga
cgcgtactctttggtattggtatgaggcacgttggtgctaacgtcgcagagcttcttgct
caggagtttggctctatccaggcgcttgctacagctcctgtcgagaaaatcgctgaaatc
ccaggtattggtcctaagattgcagagtctgtacacgagttcttttcgattccagaaaat
gttgccgttattgagcgtcttcgtcaggcgggtgtagtgcttgaggaagagaaaacagaa
aacgagcttcctcagacgcttgctgggcttacttttgttttaacgggaactcttgagcac
tttacccgcgatgaagctggtgctcagcttaaagctatgggagcaaaagtttctggctct
gtatctaagaagacaagctttgtagtagcaggagaagccgcgggatctaagcttacaaag
gctgaaagcttgggtgttcccgtacttgatgagacggcacttcagcaaattcttgaaaca
ggccaagcacctgcttaa
DBGET
integrated database retrieval system