KEGG   Arthrobacter sp. PAMC 25486: ART_3548Help
Entry
ART_3548          CDS       T03487                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
arm  Arthrobacter sp. PAMC 25486
Pathway
arm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:arm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ART_3548
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:arm03400]
    ART_3548
Enzymes [BR:arm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ART_3548
DNA repair and recombination proteins [BR:arm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ART_3548
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AIY03147
UniProt: A0A0A1D120
LinkDB All DBs
Position
complement(3686760..3689369)
Genome map
AA seq 869 aa AA seqDB search
MSGVRSRAGVAKNSPHGNNELCPPRRPNVSRSANQLVNVAGHRLKLSNLDKVFYPDSGTT
KADVLGYYAQVAHVLIPQAARRPATRKRWVDGVGTAEKPGKVFFRKDLENSAPDWVPRQI
LMHKDHVNTYPLVNEAAVLAWFGQVAALEIHVPQWRFGPDAKPARPDRLILDLDPGDGAG
LRECAEAAQLCRELLTAMGLEAYPVTSGSKGIHLYAALDGNHDSTDIAEVAHELARSLES
DHPDLIVSDMKKSLRNGKVLIDWSQNSEAKTTICPYSLRGRTRPTVAAPRLWDEIADPEL
RQLELHEVVARVKQGIDPISNLGLQQPVEDQPEAVDRLQKYRSMRDAGKTPEPVPLQAAK
DAASSEPTFVIQEHHASRLHWDFRLEHSGVLVSWAVPKGPPLEHTENRLAVMTEDHPLGY
GSFEGTIPQGEYGAGTVTIWDAGTCLLEKWREGKEVIALLHGRPDGGLGGVLRRYALINT
PGMGGAKNWLIHLMKDPPDTDPQTQKKAGEFDLSPGADSAVNRLVTPTRRAKIWSGEALD
LPAPMLATAATADGVDFSTSWSFEMKWDGMRAMAGVAGGTVRIASRSGRDVTQQYPELQE
LASLAADGSVLDGEIVALDKSGRPNFGLLQRRMKLSKPQDIARAMKTVPVQLILFDALQT
SAGSVVQPLQHKPYSQRRESLLTAVAQGRHIHLPPALTGTLEEALITSREFQLEGVVAKK
MESRYLPGKRSPDWLKIKDEKHQEVIVIGWRKGTGSRSKTLGSLLLAVHNESGLRYVGRV
GTGFSEHELQEAAAMLKTSERKTPPVKNIAATDRRDVVWTTPKLVGEVKYAELTADGKLR
HATWRGWRPDKTAKDVHWELGHAQGSGLP
NT seq 2610 nt NT seq  +upstreamnt  +downstreamnt
gtgtccggggtgcgatcacgggcaggggtggcaaagaattcaccacacggtaacaatgaa
ctatgtccaccaaggaggcctaacgtgtcccgttcagcaaatcaactcgtgaatgttgcc
ggccaccgtctaaagctcagcaatttggacaaggtgttttaccctgattccggcaccacc
aaggctgatgtgctgggttactacgcccaggtggcccatgtcctgattccacaggcggcg
aggcgccccgctacacgaaaacgctgggtggacggagtgggcacggccgagaagcctgga
aaagtcttttttcgaaaagaccttgagaactcagcgccagactgggttcctcggcaaatc
ctcatgcacaaggaccatgtcaatacttatcccctcgtcaacgaggctgccgttttggca
tggtttggccaagtggccgcactggaaatccatgttccacagtggaggtttggtcccgac
gcgaagccagcaagacccgaccggctgattctggacttggatccaggggatggtgccggc
ctcagggagtgtgccgaggctgcgcagctgtgccgtgaactgctcactgccatgggcttg
gaggcctatccggtcacgagcgggtccaagggcatccatctctatgcggctctggacggc
aatcatgattccacagacattgcagaagtcgctcatgaacttgccaggtctttggaatcg
gaccatccggacctgatcgtctctgacatgaaaaagtcattgcggaacggcaaggttctg
attgactggagtcaaaatagcgaagccaagaccactatctgcccgtactcactccgcgga
aggactaggcccaccgttgccgccccacgattgtgggatgagattgcggaccccgaactg
cgccagctcgaactccacgaagtggtagcgagggtcaaacaaggaatcgaccccatcagt
aatttgggtttgcagcaaccagtcgaggatcagccagaggcagtggaccggcttcagaaa
taccggtccatgcgcgacgctggcaaaacccccgagccggtccccctccaagctgcgaaa
gacgccgcttcctccgaacccacgtttgtcattcaggaacatcacgcgtctcgactgcat
tgggatttccgactcgaacattccggcgtcctggtgtcctgggccgtccccaaaggcccg
cccctagaacatactgaaaaccggctcgccgtcatgacggaggaccaccccttaggctat
ggttccttcgaaggcaccattcctcaaggtgagtacggagcaggtactgtcaccatttgg
gacgccggaacatgcttactggagaaatggcgagagggaaaggaagtcattgcattgctc
cacggcaggcccgacggcggcttgggcggagtcctgcgccgctacgccctcatcaacacc
cccggcatgggaggggcaaagaattggctgatccacctcatgaaagacccgcccgatacc
gatcctcagacacagaaaaaagcgggtgagttcgacctctcacccggtgccgatagtgcg
gttaacaggctagtcacgccgacgcggcgggcgaaaatttggtcgggggaagccttggac
ctccccgctcccatgctggcgacggcggccacagcagacggcgtggatttctccacatca
tggtcattcgagatgaaatgggatggcatgcgtgccatggccggtgtggctggtgggaca
gtgcgtatcgccagcagaagtggccgagatgtcactcagcaatacccggaactccaggag
cttgcatctttggccgctgacgggtccgtgctcgacggcgaaattgtcgccttggacaag
tccggtcggcccaatttcggcttactacagagacgcatgaagctgagtaagcctcaggat
attgcgagggccatgaaaacggttcccgtccagctgattctttttgatgcgctgcaaaca
agtgctgggagcgtcgtgcaaccactgcagcacaagccgtattcacaacggcgcgagtca
ctccttacagcagttgcccaaggccgacacatccacctgccgcctgccctcacgggaact
cttgaagaagcgctgattacaagccgtgaattccagttagagggtgtggtcgccaagaaa
atggaaagccgctatctaccgggtaagcgcagcccggactggctaaagatcaaggacgaa
aaacatcaggaagtcatcgtcattggctggcgtaagggtaccggctcccgcagcaaaacc
ctcggctcactactacttgccgtgcataacgagagcgggctgcgctatgtgggaagggtg
ggcaccggtttctccgaacatgaactgcaggaggctgcagccatgctgaagaccagtgaa
cgcaagactccacctgtcaagaacatcgccgccacggacaggcgcgacgtcgtgtggaca
acacctaaactggtcggagaagtcaaatacgctgaactcaccgctgacggcaaactgcgt
cacgcaacctggcgtgggtggcgtcccgacaaaacagccaaggacgtgcattgggagcta
ggccatgcgcaaggctctggcctgccgtga

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