Rhizobium rhizogenes K599: B0909_16945
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Entry
B0909_16945 CDS
T04767
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
aro
Rhizobium rhizogenes K599
Pathway
aro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0909_16945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aro03019
]
B0909_16945
03009 Ribosome biogenesis [BR:
aro03009
]
B0909_16945
Enzymes [BR:
aro01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
B0909_16945
Messenger RNA biogenesis [BR:
aro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B0909_16945
Ribosome biogenesis [BR:
aro03009
]
Prokaryotic type
rRNA helicases
B0909_16945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
WHIM1
Pan_kinase
Motif
Other DBs
NCBI-ProteinID:
AQS64017
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All DBs
Position
2:808174..810024
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AA seq
616 aa
AA seq
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MTDTQGIAPAIAQALEKRGYKDLTPVQKAMLAPELAEKDALVSAQTGSGKTVAFGIALAP
TLLPENGRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRTERRA
LERGAHIVVGTPGRLCDHIKRGALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPETR
RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRAMLVTPADRENAIINALR
FYEARNAIVFCSTRAAVNHLTARLNNRGFAVVALSGELTQNERTHALQAMRDGRARVCVA
TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVNQRRKAERLL
DGAKVSPAWVRPPSAEEIVERDGARLLADPSLTEAVAEDERDFVTRLLEQHGAEKVAAAF
VRLYHAGRSAPEDIAEVSLDNNRKPRRDSFETVENNAPRRERSDFADSAWFSLSVGRKQS
AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMTLEKGIRLK
ALEGKPEMTGGFREDTRPAKAQRKFGKSDHAGGERDDRKGGDDKPWKKKKPFGDKPKYEG
KKDKPFEKRGPKPTKG
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacccagggtatcgccccggcgatcgcgcaggcgttggaaaaacgcggctat
aaagacttgacccccgtgcagaaggccatgcttgcgccggaactggccgaaaaggacgcg
ctggtttccgcgcagaccggttccggcaagacggtcgccttcggcattgcactggcgccg
acccttctgccggaaaatggccgctttggtcaggcttccgcaccgctggcgcttgccatc
gcgccgacccgcgaactggccatgcaggtgaagcgcgagctggaatggctttacgaattc
gccggggtctccatcgcatcctgcgtcggcggcatggatatccgcaccgagcgccgggcg
ctggagcgtggcgcccatatcgtcgtcggcacccccgggcgtctgtgcgaccacatcaag
cgcggcgcgcttgatctctcctcgatccgcgccgtggtgctggacgaggcggacgagatg
ctcgatctcggtttccgcgaggatctggaattcattctggaggaatccccggaaacccgc
cgcaccctgatgttctcggccaccgtgccgcgcagcatcgccaagctggccgaaagctac
cagaagaacgcagtacgcatcgccaccgcttccgaacagaagcagcatgtggatatcgaa
tatcgcgccatgctggtaacaccggccgaccgcgagaacgccatcatcaatgcgctgcgc
ttttacgaagcccgcaacgccatcgtcttctgctccacccgtgcggcagtgaaccatctg
acggcgcggctcaacaatcgcggctttgccgtcgttgctctctccggcgaactcacccag
aacgagcgcacccacgcgctgcaggccatgcgcgacggccgcgcccgcgtctgcgtggcg
accgacgttgccgcccgcggcatcgacctgccgggtctcgaactcgtcatccatgccgac
ctgccgaccaattccgaaacgcttctgcaccgctccggccgtaccggccgcgccgggcag
aagggcgtcagcgccatcgtcgtgccggtcaaccagcgccgcaaggcagaacgcctgctg
gacggcgccaaggtcagcccggcatgggttcgcccgccatcggccgaagagatcgtcgag
cgtgatggcgcccgtcttctggccgatccgtcgctcaccgaggccgtggccgaggacgaa
cgcgatttcgtcaccagactgctcgaacagcacggcgcggaaaaagtcgccgccgctttc
gtgcgcctttaccacgccggacgttccgcgcccgaagacatcgccgaagtctcgctggac
aacaatcgcaagccgcgccgcgacagtttcgagacggtcgaaaacaatgcgccgcgccgc
gaacgctccgatttcgctgacagcgcctggttttcgctgtccgtcggccgcaagcagagc
gccgagccccgctggctgatccccatgctctgccgtttcggcaagatcacccgccaggat
attggcgcgatccgcatgcagcagacggagactttcgtggaactggcggccgatgccgtc
gatcgcttcacctccgccatcggcaaggacatgacgctcgaaaagggcattcgcctgaag
gcgctcgaaggcaagccggaaatgaccggcggcttccgcgaagacacgcgcccggcaaag
gcgcagcgcaaattcggcaaatcggaccatgccggcggcgagcgtgacgaccgcaagggt
ggtgacgacaagccctggaaaaagaagaagcccttcggcgacaagccgaaatacgagggc
aagaaggacaagcccttcgaaaagcgtggaccgaagccgacgaagggctga
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