KEGG   Rhizobium rhizogenes K599: B0909_16945
Entry
B0909_16945       CDS       T04767                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
aro  Rhizobium rhizogenes K599
Pathway
aro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aro00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B0909_16945
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aro03019]
    B0909_16945
   03009 Ribosome biogenesis [BR:aro03009]
    B0909_16945
Enzymes [BR:aro01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     B0909_16945
Messenger RNA biogenesis [BR:aro03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     B0909_16945
Ribosome biogenesis [BR:aro03009]
 Prokaryotic type
  rRNA helicases
   B0909_16945
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 WHIM1 Pan_kinase
Other DBs
NCBI-ProteinID: AQS64017
LinkDB
Position
2:808174..810024
AA seq 616 aa
MTDTQGIAPAIAQALEKRGYKDLTPVQKAMLAPELAEKDALVSAQTGSGKTVAFGIALAP
TLLPENGRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRTERRA
LERGAHIVVGTPGRLCDHIKRGALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPETR
RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRAMLVTPADRENAIINALR
FYEARNAIVFCSTRAAVNHLTARLNNRGFAVVALSGELTQNERTHALQAMRDGRARVCVA
TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVNQRRKAERLL
DGAKVSPAWVRPPSAEEIVERDGARLLADPSLTEAVAEDERDFVTRLLEQHGAEKVAAAF
VRLYHAGRSAPEDIAEVSLDNNRKPRRDSFETVENNAPRRERSDFADSAWFSLSVGRKQS
AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMTLEKGIRLK
ALEGKPEMTGGFREDTRPAKAQRKFGKSDHAGGERDDRKGGDDKPWKKKKPFGDKPKYEG
KKDKPFEKRGPKPTKG
NT seq 1851 nt   +upstreamnt  +downstreamnt
atgacagacacccagggtatcgccccggcgatcgcgcaggcgttggaaaaacgcggctat
aaagacttgacccccgtgcagaaggccatgcttgcgccggaactggccgaaaaggacgcg
ctggtttccgcgcagaccggttccggcaagacggtcgccttcggcattgcactggcgccg
acccttctgccggaaaatggccgctttggtcaggcttccgcaccgctggcgcttgccatc
gcgccgacccgcgaactggccatgcaggtgaagcgcgagctggaatggctttacgaattc
gccggggtctccatcgcatcctgcgtcggcggcatggatatccgcaccgagcgccgggcg
ctggagcgtggcgcccatatcgtcgtcggcacccccgggcgtctgtgcgaccacatcaag
cgcggcgcgcttgatctctcctcgatccgcgccgtggtgctggacgaggcggacgagatg
ctcgatctcggtttccgcgaggatctggaattcattctggaggaatccccggaaacccgc
cgcaccctgatgttctcggccaccgtgccgcgcagcatcgccaagctggccgaaagctac
cagaagaacgcagtacgcatcgccaccgcttccgaacagaagcagcatgtggatatcgaa
tatcgcgccatgctggtaacaccggccgaccgcgagaacgccatcatcaatgcgctgcgc
ttttacgaagcccgcaacgccatcgtcttctgctccacccgtgcggcagtgaaccatctg
acggcgcggctcaacaatcgcggctttgccgtcgttgctctctccggcgaactcacccag
aacgagcgcacccacgcgctgcaggccatgcgcgacggccgcgcccgcgtctgcgtggcg
accgacgttgccgcccgcggcatcgacctgccgggtctcgaactcgtcatccatgccgac
ctgccgaccaattccgaaacgcttctgcaccgctccggccgtaccggccgcgccgggcag
aagggcgtcagcgccatcgtcgtgccggtcaaccagcgccgcaaggcagaacgcctgctg
gacggcgccaaggtcagcccggcatgggttcgcccgccatcggccgaagagatcgtcgag
cgtgatggcgcccgtcttctggccgatccgtcgctcaccgaggccgtggccgaggacgaa
cgcgatttcgtcaccagactgctcgaacagcacggcgcggaaaaagtcgccgccgctttc
gtgcgcctttaccacgccggacgttccgcgcccgaagacatcgccgaagtctcgctggac
aacaatcgcaagccgcgccgcgacagtttcgagacggtcgaaaacaatgcgccgcgccgc
gaacgctccgatttcgctgacagcgcctggttttcgctgtccgtcggccgcaagcagagc
gccgagccccgctggctgatccccatgctctgccgtttcggcaagatcacccgccaggat
attggcgcgatccgcatgcagcagacggagactttcgtggaactggcggccgatgccgtc
gatcgcttcacctccgccatcggcaaggacatgacgctcgaaaagggcattcgcctgaag
gcgctcgaaggcaagccggaaatgaccggcggcttccgcgaagacacgcgcccggcaaag
gcgcagcgcaaattcggcaaatcggaccatgccggcggcgagcgtgacgaccgcaagggt
ggtgacgacaagccctggaaaaagaagaagcccttcggcgacaagccgaaatacgagggc
aagaaggacaagcccttcgaaaagcgtggaccgaagccgacgaagggctga

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