KEGG   Arthrobacter sp. PGP41: C3B78_01940Help
Entry
C3B78_01940       CDS       T05450                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
arth  Arthrobacter sp. PGP41
Pathway
arth03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:arth00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C3B78_01940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:arth03400]
    C3B78_01940
Enzymes [BR:arth01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C3B78_01940
DNA repair and recombination proteins [BR:arth03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C3B78_01940
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_primase_S DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AUZ33360
UniProt: A0A2L0QUQ2
LinkDB All DBs
Position
complement(416905..419397)
Genome map
AA seq 830 aa AA seqDB search
MPAAKERVRVAGRELTLTNLDKIIYPETGTTKADVLAYYAAVAHVLVPAAYNRPATRKRW
VNGVGTADKPGEVFFQKNLEDSAPGWLPRAAITHKDRTIYYPMVNDPATLTWFGQINSLE
IHVPQWQVDSHGNQLNPDRLVLDLDPGEGAGLEACVEVALLARTILQDVGLDPVPVTSGS
KGIHLYAALDRSQTSDQISAFARELARALEADHPDLAVSDMKKTLRKGKVLVDWSQNNAA
KTTIVPYSLRGRPTPMVAAPRTWEEISSPGLSHLDYKAVIRRVQEGTDPFAAVDNAGNDP
RLEKYRSMRDPGKTPEPFTGTAGSGNTFVIQEHHASRLHYDFRLEHEGVLVSWALPKGVP
ESGGKNHLAVQTEDHPLDYGSFEGTIPKGEYGAGEVTIWDHGTYELDKWINGREVIATLT
GSEGGGLGGTRKFALIHTGRGQGKDSEGQWLIHLMEPGRPGGRRRHAPPREGQEEPPGTE
SAHEEPHGAPNQDEPRHDELRQEALDKNVAVRPGEYRPMMAASGDAADLEGSSWQFELKW
DGVRAILVGDEDSVRIFSRNGNDVTTTYPELADRTCWPARPFVADGEIVAIGAAGRPDFG
LLQGRMKLTRPAEVARARTAIPVQLMLFDLLHDDGTDLRRLPLAKRRQRLEAFFTASACP
AGLSPVLEDRVDHILESARELGLEGVMAKRTDSRYVSGQRTRTWIKLKVEQTQEVVVGGW
RPGKGGREDTVGSLLVGIPDGTKLQYAGRVGSGFSGRELAELRQTVDRLARKTSPFLDVP
RPDAADAHWIAPELVGEVTYSEWTGTGRLRHPVWRGWRLDKDPAEVVREG
NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt
atgcccgccgctaaggagcgtgtccgggtggcagggcgggaactgaccctcaccaacctg
gacaagatcatctatccggaaacgggcaccaccaaggcggatgtcctggcctactacgcc
gcagtggcccacgtcctggtcccggcggcgtacaacaggccggccaccaggaaacggtgg
gtgaacggcgtggggaccgccgataagcccggcgaggtgttcttccaaaagaaccttgag
gattcggctccgggctggctcccccgggcagccatcacccacaaagaccgcaccatctac
tatccgatggtcaacgaccccgccacccttacctggttcggacagatcaactccctggaa
atccacgtcccgcagtggcaggtggactcccacggcaaccaactgaaccccgacaggctg
gtcctggatttggaccccggcgaaggcgccggcctggaggcgtgtgttgaagtagccctc
ctggcgcgcactatcctccaggacgtgggcctggaccccgtcccggtgaccagcggcagc
aagggcatccacctgtacgccgccctggaccggagccagacctccgaccagatctccgcc
ttcgcccgcgaacttgcccgggcccttgaggccgaccacccggacctggccgtcagcgac
atgaaaaagaccctgcgcaagggcaaggtcctggtggactggagccagaacaacgcggcc
aagacgacgatcgtgccgtactcgctgcgtggccgccccacccccatggtggctgcaccc
cggacctgggaggagatcagctcccccggcctcagccacctggactataaggcggtgatc
cggcgggtgcaggaaggcacggacccgttcgccgccgtcgataacgccggcaatgacccc
cggctggagaagtaccgctccatgcgcgatcccgggaagactccggagcctttcaccggc
acggcgggcagcggaaacacctttgtgatccaggaacaccacgccagccgcctgcactat
gacttccgccttgagcatgaaggcgtgctggtgtcctgggcgctgccgaagggcgtgcct
gagtccgggggcaagaaccacctggcagtgcagaccgaggaccatcccctggactacggg
agcttcgaggggactattcccaaaggggaatacggcgccggcgaggtgaccatctgggac
cacggaacgtatgagctggacaagtggatcaacggcagggaagtcattgccaccctcacc
ggttccgaaggaggagggctgggcgggaccaggaaatttgcgctcatccacacggggcgg
gggcagggaaaggattccgagggccagtggcttatccacctcatggagcccgggcggcct
ggcggacgacggcggcacgcaccgccccgggaagggcaggaggagccgcctggtacggag
tcggcccacgaggaaccacacggggcgccgaaccaggatgagccgcgccatgatgagctg
cgccaggaggcactggataaaaacgttgcggtgcggcccggggaatacaggccgatgatg
gccgcctccggagatgcagcggacctggagggcagcagctggcagttcgaactcaagtgg
gacggggtccgcgccatcctcgtgggagacgaagattcggtacggattttcagccgcaac
ggcaatgatgtcaccaccacttaccctgaacttgcggaccggacctgctggccggcccgg
ccgttcgtcgccgacggtgagatcgtcgccatcggcgcggcaggaaggcccgatttcggg
ctcctgcagggaaggatgaagctcacccggcccgccgaggtcgcacgggcccggactgcc
attcccgtgcagctgatgcttttcgacctgctgcacgacgacggaacggacctccggagg
ctgccgctcgccaagcgccggcaacggctggaggccttcttcaccgcatcagcctgcccc
gcggggctttctccggtccttgaggaccgggtggaccacatcctggagagtgcccgggaa
ctgggcctcgaaggggtgatggccaagcggaccgacagccgctacgtgagcgggcagcgg
acccgtacctggatcaagctgaaggtggagcagacgcaggaggtagtggtgggcggctgg
cgccccggaaaaggcgggcgggaggacaccgtaggctcactgctggttggcatcccggac
gggacaaagctgcagtacgcagggcgggtgggcagcggcttcagcgggcgggaacttgcc
gagctccgccagaccgtggaccggctggcccggaagacctctccgttcctggacgtaccg
cgcccggacgcggcggacgcccactggattgcccccgaactggtcggcgaagtgacctac
agcgagtggacgggtaccgggaggctgcggcaccccgtgtggcggggctggcggctggac
aaggacccggcggaggttgtgcgtgaaggctga

DBGET integrated database retrieval system