Arthrobacter alpinus A3: MB46_08975
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Entry
MB46_08975 CDS
T04228
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
arw
Arthrobacter alpinus A3
Pathway
arw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MB46_08975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arw03019
]
MB46_08975
03009 Ribosome biogenesis [BR:
arw03009
]
MB46_08975
Enzymes [BR:
arw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MB46_08975
Messenger RNA biogenesis [BR:
arw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MB46_08975
Ribosome biogenesis [BR:
arw03009
]
Prokaryotic type
rRNA processing factors
MB46_08975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DUF5119
Motif
Other DBs
NCBI-ProteinID:
ALV47538
UniProt:
A0A0U2XW54
LinkDB
All DBs
Position
complement(2039862..2043032)
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AA seq
1056 aa
AA seq
DB search
MAAAPAKRTTRRRATAPVTAPAAAQAEQGVQGELSLSGQDATAVAALSDSAPVAVEVAKA
PAKRTRRAKAPVTSPGEATPAAELDAAPVAEAVVEAPAASESAPAKKAPARRASRRAAAP
AQSAAGATASVIAAEEVAAPVVTASVAEPATAEPVESAEPAPIKTRVTRSRRKSAAQSAP
VLPSGAESAPEVVQSAPEEAGAADVPAATEAPVAEPPAAESLFLSPAAGLSALFLAPDLS
LAVPAATASEDSEEKESTTTGNDGDRRGRARNRNRRRGNEAAETVEAADSDTDEDEVMDD
GVTSRRRRRRRRGDQDLELTGGTDEDPPNTVTRVRAPRTPAETTATTSDRVTSLRGSTRL
EAKKQRRRDSRDSGRRRTVITEAEFLARRESVDRVMVVRQSDDRIQIGVLEDGILAEHFV
SKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVDWDAANLNGQPRRIEN
ALKSGDSVLVQVSKDPVGHKGARLTSQISLPGRYLVFVPGGSMTGISRKLPDVERNRLKR
VLKDHLPENAGVIVRTAAEGASEEELTNDINRLRAQWEGINERASSHKTLAPEMLYGEPD
LTIKVVRDVFNEDFSKLVVSGEDAWDTIEAYVTYVAPDLLDRLEKWTKPDDIFAVHRIDE
QINKALERKVFLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVR
QLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRM
GTGLLEVFGELCPSCAGRGMVTHEIPVEHRRTHSPAVEVAQIHAPAPKQENRENERTANR
STRSERKRNRNRNQQGETEPQLEAAPVVVSDEAADAAKAQKAHEARAALANIAAAAAASH
HERVSAEPHQAPAAVESDAATLTLGGEAIELPRGHRSESTGFSGTTNVDQAAALADLTQA
LDQLSAPGSSETDSAEAASTETGGNNRSRSRRGRRNRSARSAQGGADMAVETSAQAPAGQ
GSTPHSSAVADKPVVPVVKKASEPIILGVGVPASEL
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
gtggcagcggctccggccaagcggaccacccgccgtcgtgccacggcacctgtcacggca
cctgccgccgcacaggctgaacaaggcgtacagggcgaattgagcctgtcgggtcaggac
gctacggcagtagcagctctgagcgattccgccccggttgctgttgaggtggccaaggcg
cccgccaagcggacccgccgggccaaggctcccgtcaccagcccgggcgaggcaacgccg
gccgcggagctggacgcagctcccgtggccgaagccgtcgttgaggctcccgccgcgtca
gaatctgctcccgccaagaaggcgccggctcgccgcgcctctcggcgtgccgctgcgccg
gcacaatccgccgcaggcgccaccgcttcggtcattgccgcggaggaagtagccgccccg
gtcgttaccgcatccgttgccgagcctgccactgctgagcccgtagaatccgcggagccc
gcccccatcaagacccgcgtcacgcgcagccggcggaagtctgctgcccagtcagcaccc
gtgctcccatctggagccgagtctgcaccggaggttgttcagtcagcacccgaagaagcc
ggcgccgcggacgttccggccgcgacagaagcccctgtggccgagccgccagctgcggag
tccttgttcctgtcacctgccgccggactgtctgcactgttcctggcccctgatttgagc
ttggcagtaccggccgccaccgcaagtgaggattccgaggaaaaggaatcaaccacaaca
ggtaacgacggcgaccgccgtggccgtgcccgcaacaggaaccgccgccgcggcaacgag
gctgcagagaccgtcgaggcggccgactcagataccgacgaagatgaggtcatggacgac
ggcgtgacctcccgccgtcgccgtcgccgccgtcgcggggaccaggatctggaactgaca
ggcggcaccgatgaggatccgcccaacaccgtgacgcgtgtgcgtgccccgcgcaccccc
gccgagaccacagccaccacttcggatcgcgtcaccagcctgcgcggctcgacccgcttg
gaagccaagaagcagcgccgccgcgactcccgcgattccggccgccgccgtaccgtcatc
acagaagccgaattcctggcccgccgagagtccgttgaccgtgtcatggtggttcgccag
agcgatgaccgaattcagatcggtgttctcgaggacggaatcctcgccgagcacttcgtc
tccaagacgcaacaggattcgctcattggcaacgtctacctcggcaaggtccagaacgtg
ctgcccagcatggaagctgccttcgttgacattggacgcggccgcaacgccgtcctgtat
gccggtgaagttgactgggatgcagcaaacctcaacggacagccgcgccgcattgagaac
gcgctcaagtccggtgactccgtactggtccaggtctccaaggacccggttggacacaag
ggtgcccgcctgaccagccagatctccctgcccggacgctacctggtgtttgtcccgggt
ggttccatgacaggcatctcacgcaagctgcccgacgtcgaacgcaaccgcctcaagcgc
gtcctgaaggaccacctgcccgagaacgccggcgtcattgtgcgcacggccgccgagggt
gccagcgaggaagagctcaccaacgacatcaaccggctgcgggcacagtgggaaggcatc
aacgaacgagcgtcctcgcacaagaccctcgccccggaaatgctgtacggcgaaccggac
ctcaccatcaaggtggtccgcgacgtcttcaacgaggacttctcgaagctggttgtatcc
ggtgaagacgcatgggacacgattgaggcctacgtaacctacgttgccccggatctgctg
gatcgccttgaaaagtggaccaagcccgatgacatctttgccgtgcaccgcatcgacgag
cagatcaacaaggcccttgagcgtaaggtcttcctgccttcgggtggttcactggtcatc
gaccgcaccgaggccatgacagtggttgacgtcaacaccgggaagttcaccggctccggc
ggaaacctggaagagaccgtcacgaagaacaaccttgaagcagccgaagaagtggttcga
cagctgcgcctgcgtgacatcggtggcatcatcgtcatcgacttcatcgacatggtcctg
gaatccaaccgcgatctggtgctgcgccgcctcgtggagtgcttgggccgtgaccggacc
aagcaccaggttgccgaggtgacctcgctgggtctggttcagatgacccgtaagcgcatg
ggcaccggactgctggaagtattcggcgagctctgcccgtcctgcgccggccgcggcatg
gtcactcacgagatccccgtggagcaccgccgcacccacagccccgctgtggaagtagcc
cagattcatgccccggctcccaagcaggaaaaccgtgagaacgagcgcacagccaaccgg
tcgacccgcagtgagcgcaagcgtaaccgcaaccgcaaccagcagggcgaaaccgaaccc
cagcttgaggccgcaccggtagttgtgagcgacgaggctgcggacgcggccaaggcgcag
aaggcccacgaggcacgggctgcgctggccaacattgccgccgcggctgctgcttcacac
cacgaacgcgttagcgctgagccccaccaggcacccgctgcagtggagtccgacgccgca
accctcaccctgggtggggaagctattgagctgccccggggtcaccgcagtgagagcacg
ggcttctccggcaccaccaatgtggatcaggcggctgctctggcagacctgacgcaggct
ctggatcagctgtcggcacccggaagctcggagaccgattcggctgaggcggcgtcgacc
gagactggcggcaacaaccgctcacggtcccgccgcggacgccgcaaccgcagcgcacgc
agcgcccagggtggagctgacatggccgtggaaacctccgcacaggctcctgccggccag
ggctccacaccccacagcagcgcagttgctgacaagcccgtagtgcccgtggtcaagaaa
gcatccgaaccgatcatcctcggcgtgggagtgcctgcctcagagctctaa
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