Arthrobacter sp. ZXY-2: ARZXY2_3628
Entry
ARZXY2_3628 CDS
T05201
Gene name
lig
Definition
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
arx
Arthrobacter sp. ZXY-2
Pathway
arx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ARZXY2_3628 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arx03400
]
ARZXY2_3628 (lig)
Enzymes [BR:
arx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ARZXY2_3628 (lig)
DNA repair and recombination proteins [BR:
arx03400
]
Prokaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ARZXY2_3628 (lig)
SSDB
Motif
Pfam:
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Oxidored_nitro
Other DBs
NCBI-ProteinID:
AOY73139
UniProt:
A0A1D9FCR3
LinkDB
Position
3775314..3777833
AA seq
839 aa
MAGKQKERVVVEGHELTLTNLGKIIYPETGTTKAEVLAYYAAVAPYLIPAAANRPVTRKR
WVNGVGTAENPGEVFFQKNLEDSAPRWIPRVTIHHSDHANVYPMVNNLATLTWMAQIASL
EIHVPQWQVDPAGNPLRPDRFVLDLDPGPGAGLPECVEVARLARSILQDMGMEPVPVTSG
SKGIHLYTGLEGTLKSDQVSAFAHELARALEADHPALVVSDMKKSLRKGKVLVDWSQNSG
NKTTIVPYSLRGKAHPTVAAPRTWAELEDPDLDHLDYTEVMERVSTGEDFFAPISGRHLP
PHGENDDVGRPGSASSDANPGGREKLTVDGRLSKYVGMRDPGKTPEPFPSSSGPSVGDAS
RRSSEQPKPGDPAPPGGIFVIQEHHARRYHLDLRLERDGVLASWALPRGVPETPDRNNLA
VHTEDHPMEYADFAGVIPKGEYGAGTMTIWDRGEYTCEKWREGKEVIATLTGEPGGGLGG
TKRLALINTGDRWLIHLMKEQPGGRRASKAAPEPPKPGPMQDYAPMLATSGTTDDLHGGD
WLYELKWDGIRAIITGTEGKIRLMSRNGNDLTATYPELTDRSCWPDGDFVADGEIVALGK
GSRPDFGLLQQRMNLVKAGDIERARASVPVQLMLFDLLYDDGADLTGLPFRGRRERLAAF
AERLTGGCPLHLSEVLDHDVDDLLHVASDLKLEGVMAKKAGSRYSPGRRSRAWIKLKLEQ
SQEVVVGGWRPGAGARSGTFGSLLLGVPRDGKLHYVGRVGTGFKDWQLKEIMGKLESRAA
EESPFLDIPREDAAGARWVDPELVAEVTFGEWTGPGRLRHPVWRGWRPDKSPEDVNQPN
NT seq
2520 nt
+upstream
nt +downstream
nt
gtggcaggaaagcagaaggagcgtgtcgtcgttgagggtcatgagctgaccctcacgaac
ctgggcaaaatcatctacccggagaccggcaccaccaaggccgaggtgctggcctactac
gccgcggttgccccgtacctgatccccgcggcggccaaccgtcccgtgacgcgcaagcgc
tgggtgaacggcgttggaacggcagaaaacccgggcgaggtcttcttccaaaagaacttg
gaagactcggcgcccaggtggattccgcgggtcaccattcaccattcggaccacgccaat
gtctaccccatggtcaacaacctcgccacgctgacgtggatggcgcagatcgcgtcattg
gaaatccacgtaccgcagtggcaggtggaccctgcaggtaatccgttgcgccctgaccgc
tttgtcctcgacctcgaccccggaccgggcgccggcctgcccgaatgcgttgaagttgcc
cggctggcccgttccattctccaggacatgggcatggagccggtgccggtcaccagcggc
agcaaaggcatccacctctacacgggcctggaagggacgctgaagtccgatcaggtctcc
gccttcgctcacgaacttgcccgggccttggaagcggaccacccggcgttggttgtgagt
gacatgaagaagtccctccgcaagggaaaggtcctggttgactggagccagaacagcggc
aacaagaccacgattgtcccgtactccctgcgcggcaaggcgcaccccaccgtcgccgcc
ccgaggacctgggcggagctcgaagacccggacctggaccacctcgactacaccgaagtg
atggaacgggtcagcactggcgaggacttcttcgcgccgatttccggccggcacctcccg
ccgcacggtgaaaacgacgacgtcggaaggccgggttccgcgtcatcggatgcgaacccg
ggtggtcgggagaagctgacggtggacggccgcctgtccaagtacgtaggaatgcgtgat
ccgggcaagaccccggaacctttcccgtcgtcgtccggtccttccgtaggcgacgcgtcc
cggaggtcgtccgaacagcccaagcccggagaccctgccccgcccggcggtatcttcgtc
atccaggaacaccatgcccggcgataccacttggacctgcgcctggagcgggacggagta
ctggcctcatgggcgctgccgcgcggcgtcccggaaacgccggaccggaacaaccttgcc
gtgcataccgaagaccaccccatggagtacgccgattttgcgggtgtcatccccaaaggc
gagtacggtgcagggaccatgaccatctgggaccgcggcgaatacacgtgcgaaaaatgg
cgcgaaggcaaggaagtgatcgccaccctcacgggggaaccaggcggtggcttgggcgga
acaaagcggctcgccctcatcaacaccggcgaccgttggctcatccacctcatgaaggaa
cagcccggaggccgcagggcgtcgaaagcggcaccagaaccacccaaacccggaccgatg
caggactatgcgccgatgctggcgacgtcgggcaccaccgatgatctgcacggaggtgac
tggctctacgaactcaaatgggatggcatccgcgccatcatcaccggaaccgaaggcaaa
atccggctgatgagccgcaacggcaacgacctcacggccacctaccctgagctgacggac
cggtcctgctggcccgacggcgacttcgtggcggacggcgaaatagttgccctcgggaag
ggttcgcggcccgacttcggcttgctccagcagcgcatgaacctcgtcaaagccggggac
attgagcgggcccgggcttcggttcccgtgcaactgatgcttttcgaccttttgtacgac
gacggcgcggacctcaccgggctgcccttccgcggccggagggagcggctcgcagccttt
gccgaacgcctgactggcggttgcccgcttcatttgtccgaggtactggaccatgatgtg
gacgacctcctgcatgtggcgtccgatctcaaactggaaggcgtgatggccaagaaggcc
gggagccgctactcccccgggcggcgcagccgggcgtggatcaagctaaagctcgaacag
agccaggaggtagtggttggcggctggcgtccgggcgccggagcccggagcggaacgttc
ggctcgctcctcctgggggtcccccgtgacgggaagctgcattacgtgggacgcgtgggc
accggcttcaaggactggcagctgaaggagatcatgggcaagctcgagtcccgtgctgcg
gaggaatcgcccttcctggatattccgcgcgaggatgccgcgggcgcacggtgggtggat
ccggagcttgtggctgaggtgactttcggggagtggaccggcccgggccgtttgcggcac
ccggtgtggcggggttggcggccggacaagtctcctgaggacgtgaaccagcccaactga
DBGET
integrated database retrieval system
