KEGG   Arthrobacter sp. YC-RL1: ATC04_02380Help
Entry
ATC04_02380       CDS       T04187                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ary  Arthrobacter sp. YC-RL1
Pathway
ary03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ary00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ATC04_02380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ary03400]
    ATC04_02380
Enzymes [BR:ary01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ATC04_02380
DNA repair and recombination proteins [BR:ary03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ATC04_02380
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ALQ29495
LinkDB All DBs
Position
complement(523472..525928)
Genome map
AA seq 818 aa AA seqDB search
MARREQTVTVDGRTLKVSNLDKVLYPETGTTKGEVIDYLQRVAPALLPHAAWRPATRKRW
VDGIGTAQNPGTVFFRKDLEDSAPSWIPTARLEHKTHSNTYPLANDAAVLAWFGQVAALE
IHVPQWRFNASLEQQHPDRLVLDLDPGPGAGLAQCAEVALLCREILEGMDLRPFPVTSGS
KGIHLYAGLDGTATSDQVNEVAKELAASLERKHPRLVVANMKKSLRENKVLVDWSQNNAA
KTTVCPYSLRGRSRPMVAAPRTWEEIESPGLEHLDFHEVLDRLSDGLDPLAALAPSAAQG
TDRLAVYRSKRDAKLTPEPVPHPPAVGKTARAAAPDSAKPVSFVIQEHHARRLHWDFRLE
HEGVLVSWAVPKGPPLQRGIQRLAVMTEDHPLDYGTFEGTIPKGQYGAGEVSIWDAGECT
IEKWRDGKEIIAVLSGREDGGLGGIPRRFVLIQARGMGDQDNWLLQLTKEQPSEDSTVPE
DIPESSLLDEVPKPMLASSGVPEDIIEGDDWCFEMKWDGYRALAKVENGKVKLLSRNGND
MTEDFPELQELAVLAPEGAIVDGEIVALDGSARPSFSLLQQRISHRRKNRLRQAQAIKLN
FMLFDALQLPRSKGGKPENLIGEQYVDRRKYLEHAVSDGQYIKVPPAHTGPTLKAALKTS
LELGLEGVLAKECTGDYEPGRRSGSWVKIKHLLDQEALVIGWTKGQGNRASSIGSLLLAV
PAGDELEFIGRVGTGFSDLQLKEIRERLEKIARKTPPVKHIPAQFQRDAHWVTPKYVAEV
RYSELTKDGRLRHPVWRGWRDDKEPAEVRWEHPGSLMK
NT seq 2457 nt NT seq  +upstreamnt  +downstreamnt
atggctcgcagggaacaaacggtcaccgttgatggccgcaccctgaaggtcagcaatctg
gataaggtgctgtacccggaaaccgggacgaccaagggcgaagtcatcgactacctgcag
cgggtggccccggcgctgctgccgcatgcggcatggcgcccggcaaccagaaaacgctgg
gtggacgggatcggcacggcacagaacccgggaaccgtgttcttccgcaaggatctggag
gattcggccccaagctggattcccacagcccgtctggagcacaaaacccattccaataca
tatcccctggccaacgatgcggcagtactggcatggttcgggcaagtcgcagcgttggag
atccacgttccccaatggcgtttcaatgcgagcctggaacaacagcatcccgaccggctc
gtgctggatctggatcccggtcccggcgcaggcttggcccagtgcgccgaagtggctttg
ctatgccgcgaaatccttgaaggcatggacctgcggccttttccggtgacctccggatcc
aagggaatccacctttacgccggtcttgacggcacggcaacctccgaccaggtcaatgag
gtggccaaggaactcgccgcctcgctggaacgcaagcacccccggcttgtggtggcaaat
atgaagaaatccctgcgcgagaacaaggtgctggtggattggagccagaataacgccgcg
aaaaccacggtatgcccgtattcgctgcgcgggcgttcgcgtcccatggtggccgcgcct
cgcacatgggaagaaatcgagtcccccggtctggagcacctagacttccacgaagtattg
gaccggctgtccgacggccttgatcccttggcggccctggcgccttcggctgcgcagggc
acggatcggctcgcggtctaccgctccaagcgcgatgcaaagctcactccagaacccgtg
ccccacccgcccgcggtcgggaaaaccgcgcgggctgcggctccggattcggcaaaaccc
gtgtctttcgtgatccaagagcaccatgcccgcaggctgcactgggatttcaggctggaa
cacgagggggtcctggtctcctgggccgtcccgaaggggcccccgctccagaggggaatc
cagcggctggctgtaatgaccgaagaccaccccttggactacggaaccttcgaaggaacg
attcccaagggccagtatggcgccggagaggtgtcgatctgggatgccggtgaatgcacc
attgagaaatggcgggatggcaaggagatcatcgcggtgctgtccggacgcgaagacgga
gggctcggcggcattccgcgccgcttcgtgctgatccaggctcgcggcatgggagaccag
gacaattggctgctgcagctcaccaaggagcagccttccgaggattcgacggttccggaa
gacatccctgaatccagcctgctggacgaggttcccaaacccatgctggccagctccggg
gtgccggaggacatcatcgaaggcgacgactggtgcttcgaaatgaaatgggacgggtac
cgcgccttggccaaggtcgagaacgggaaggtgaaactgctcagccgcaacggcaacgac
atgaccgaagattttcccgagctacaggaacttgcggtgcttgcacccgagggcgcgatc
gtggacggcgaaatcgtcgccctggacggttcagcgcgcccgagcttttccctgttgcag
cagcgcatctcgcatcggcgcaagaaccggctccggcaagcgcaggccattaagctcaac
ttcatgcttttcgatgccctgcagcttccccggagcaagggcggaaagcccgagaacctg
atcggtgaacaatatgtggatcgccgcaaataccttgaacatgcggtctccgacggacag
tacattaaggtacctcctgctcataccggacccaccttgaaggccgcgttgaagacaagc
ctcgagctgggattggaaggggtgctggccaaggaatgcaccggcgactatgaaccgggc
cggcgcagcggcagctgggtgaagatcaagcacctgctggatcaggaggccctggttatc
ggatggaccaagggacagggaaaccgcgcgtcaagtatcggctcgctgctgctggccgtc
cccgccggcgatgagttggagttcatcggtcgggtcggcacggggttctcggatctgcag
ttgaaggagatccgcgaacgtctggagaagatcgcgcgcaagaccccaccggtcaagcac
atcccggcgcagttccagcgcgatgcgcactgggtaaccccgaaatatgtggcggaggtc
cgttacagcgaactgacaaaggacgggcggctgcggcatccggtctggcgcggttggcga
gatgacaaggagcccgctgaggtgcgctgggaacaccccggcagcctcatgaagtaa

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