Actinoplanes sp. SE50/110: ACPL_6882
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Entry
ACPL_6882 CDS
T02044
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ase
Actinoplanes sp. SE50/110
Pathway
ase03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ase00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACPL_6882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ase03400
]
ACPL_6882
Enzymes [BR:
ase01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACPL_6882
DNA repair and recombination proteins [BR:
ase03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACPL_6882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEV87764
UniProt:
G8SC69
LinkDB
All DBs
Position
7580062..7581030
Genome browser
AA seq
322 aa
AA seq
DB search
MMAGMAEERDGVPLTNLDQEIFPAAGATKRDLIDYLDAMSARLLPVLRDRPLSVIRVLRG
QDRFMQKNLPKYTPDWVPRTTVWAEASHREVTYALGNDRRTLLWLGNQRAVELHPALALA
SAPHRQTHLIMDLDPPEDDGFPAAVAAARLVRQALAEAGLSGAVKTSGSKGVHVFVPLAG
DPAPEDVAAAQRAVAARAERIDPVLATTAFIREDRHGRVFLDATRAGGATVAAAYSPRIR
PGVPVSFPVAWDELDGVTPADFTIHTAPALLRDDDPWAAAMPAPQPLDAGLIAEGHTIPV
ARVQAMHEGKRRAKARRESATD
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgggcatggctgaggagcgcgacggagtcccgctgaccaatctggatcaggag
atcttcccggcggcgggcgccaccaagcgggatctgatcgactatctggacgcgatgtcc
gcccggctgctgccggtgctgcgggaccggccgctgtcggtgatccgggtgctccgcggg
caggaccggttcatgcagaagaacctgccgaaatacacgccggactgggtgccgcggacc
acggtctgggcggaggcctcgcatcgcgaggtcacctacgcgctcggcaacgaccggcgc
accctgctgtggctcggcaaccagcgggccgtcgagctgcacccggcgctggcgctggcc
tccgccccgcaccggcagacccacctgatcatggatctggacccgccggaggacgacggc
ttcccggccgcggtggcggcggcgcggctggtccggcaggccctggccgaggccgggctg
agcggtgcggtgaagaccagcggctccaagggggtgcacgtcttcgtcccactggccggc
gacccggcacccgaggacgtcgccgcggcgcagcgggccgtggcggcccgcgccgagcgg
atcgacccggtgctggccaccaccgcgttcatccgcgaggaccggcacggccgggtgttc
ctggacgcgacccgggccggcggggcgaccgtggcggccgcctacagcccgcggatccgg
ccgggggtgccggtgtcgttcccggtcgcctgggacgagctggacggtgtgaccccggcc
gacttcaccatccacaccgcgccggcgctgctgcgggacgacgatccgtgggcggccgcg
atgccggcgccgcaaccgctggacgccgggctgatcgccgaggggcacaccatcccggtg
gcccgggtgcaggccatgcacgagggtaaacgccgggccaaggcgcgccgcgagagcgcg
acggactga
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