Actinotignum schaalii: FB03_02805
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Entry
FB03_02805 CDS
T03214
Name
(GenBank) RNA-binding protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
asg
Actinotignum schaalii
Pathway
asg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FB03_02805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asg03019
]
FB03_02805
03009 Ribosome biogenesis [BR:
asg03009
]
FB03_02805
Enzymes [BR:
asg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FB03_02805
Messenger RNA biogenesis [BR:
asg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FB03_02805
Ribosome biogenesis [BR:
asg03009
]
Prokaryotic type
rRNA processing factors
FB03_02805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AIE82376
UniProt:
A0A068NFS6
LinkDB
All DBs
Position
complement(643487..645862)
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AA seq
791 aa
AA seq
DB search
MAKEATASEHGTVSAAAASPFFISTPEEEAVEIPRFRINTDIPLFQEPDAANAIRVTYLV
DDDSSSGADSDSGDNSSSRRTRRRERGEHDSSARTPRVSRNDDAAPEEGDHEDTDDTSVA
PTRRRRRSLSSDDEVAAPRGSTRLAAKRARRRENREGSARRRGSITEVEYLARRESVKRD
MIVRERDGLNQIAVLEDDVLVEHYVARHTQISMVGNVYLGRVQNVLPSMEAAFVDIGKGR
NAVLYAGEVDWKAAGVTGKNRRIEQALKSGDTVLVQVTKDPIGHKGARLTSQVTLAGRHL
VLVPGGDMTGISRKLPDSERSRLKKLLKEIVPEDHGVIVRTAAEGASAEQLQNDVDRLTK
SWKEIQRKAKAAKTAPQVLKSEPELAVRVVRDIFNEDFDSLRVQGEDAWETISTYVEELS
PELMDRVSRWDDSRDIFEAYRVEEQLAKAFDRKVWLPSGGTLVIDRTEAMTVVDVNTGKF
TGSGGSLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLIECLG
RDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSTVCEACEGRGYIIHDHPVEENEEPHAP
RKRKARREATAPQREAAVQMMNSIAAAGHADAQQKDNQEKSENSEKLAKQDKPEKQPATR
RRRTSRSAAVTADTSSATTKDAAVTGRASSGSDSASTGSGSASTATAAAVTGTARKTGMV
ISSGVVSPTHAAVSPSAHAKTVSPSSSIHTGASESANAARGGTKRRAVISSGPISTGTGA
GVLSFPAGSQG
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagaagccaccgcgtcggagcacggcaccgtgagtgcggctgcggcgagcccg
ttttttatttcaacaccggaagaagaagcggtagaaattccgcgcttccgtattaatacg
gatattccacttttccaggaacccgacgctgccaacgccatccgggtcacctacctcgtt
gatgacgattcctccagcggcgcagattccgattctggcgataattcttcctcccggcgc
acccgccggcgcgaacgtggcgagcatgattcttctgcccgcacgcctcgagtttctcgg
aacgacgacgccgcccctgaagaaggcgaccacgaggacacggatgatacttcggtagcg
cccacccgcaggcgtcgtcgtagcctttcttccgatgatgaagtggcagcgccccggggc
tccacccgcctggccgccaagcgggcccgccggcgcgaaaaccgcgaggggtcggcgcgc
cggcgcggttccattacggaagtggaatacctggcgcggcgcgaatcggtcaagcgtgac
atgatcgtgcgtgaacgcgatggcctcaaccaaatcgcggtgctcgaagacgatgtgctc
gtcgagcattacgtggcgcggcatacccagatttccatggtcggcaatgtgtacctggga
cgggtgcaaaatgtgctgccttcaatggaagccgctttcgtggatatcggtaaggggcgt
aatgcggtcctctacgccggggaagtggattggaaagccgccggcgttactggaaagaat
cgccgtattgagcaggccctgaaatccggggataccgtgctggtgcaggtcaccaaggat
cctattggccacaagggcgcgcggctgaccagccaggttaccctggccgggaggcacctt
gttcttgttcccggtggggatatgaccggtatttcgcgtaagcttcccgattcggaacgc
tcgcgactcaagaagcttcttaaagaaatcgtgccggaagatcacggcgtgattgtgcgc
accgccgccgaaggggcaagcgctgagcagctccaaaatgatgtggatcgcttgacgaag
agctggaaggaaattcagcgcaaggccaaggctgcgaaaaccgccccgcaggtactcaag
agcgaaccggaactggccgtgcgggtggtacgcgatatcttcaacgaagattttgattcc
ctgcgtgtccagggtgaggatgcttgggaaacgatttccacctacgtggaagaactgtct
cccgaacttatggacagggtgagccgctgggatgattcccgcgatattttcgaggcctac
cgggtcgaagagcagctcgctaaggcttttgatcgcaaggtgtggctgccttcgggcggc
accctcgttatcgaccgcaccgaagccatgacggtggtggacgtgaacaccgggaaattc
accggatcgggtggctcgctggaagaaactgttacccgtaataatctggaagcggccgaa
gaaatcgtgcggcaattgcggctgcgcgatatcggcgggattgtggttattgactttatt
gatatggtcctggaatccaaccgtgacctggtgctgcgccggctcatcgagtgcctcggg
cgggatcgcacccgccaccaggtggcggaagtgacctccctgggcctggtgcagatgacc
cgcaagcgcgtggggcagggcctcgtggaagccttctctacggtgtgtgaagcctgcgaa
ggacgcggctatattattcatgatcacccggtggaggaaaacgaagaaccccacgcgccc
cgcaagcgcaaggcgcggcgggaagccaccgcgccgcagcgcgaggcggctgtgcagatg
atgaattccatcgccgctgccgggcacgctgatgcccagcagaaagacaaccaggagaaa
tctgaaaactcggagaagttagctaaacaggacaagcccgagaagcagcctgctacgcgg
cgtcgtcgtacctcgcgcagcgcggccgtcaccgcggatacctcgagcgctaccaccaag
gatgcggctgtcacgggccgcgcatctagcggatcggatagcgcatctactggatcgggt
agcgcaagcaccgcaaccgccgccgcagtcacgggcaccgcgcggaaaaccggcatggtt
atctcctccggcgtggtgagccccacgcacgcggccgtttcgcctagcgcccacgcaaag
acggtgtcgccgtcgtcctctatccacaccggagcgagtgagtcggctaacgctgcgcgc
ggtggtaccaagcggcgcgccgtgatttcctccgggcccatctccaccggaaccggggcg
ggagtcctgagtttcccggcgggttcccaagggtaa
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