KEGG   Aequorivita sublithincola: Aeqsu_1156Help
Entry
Aeqsu_1156        CDS       T02132                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
asl  Aequorivita sublithincola
Pathway
asl03030  DNA replication
asl03410  Base excision repair
asl03420  Nucleotide excision repair
asl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:asl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Aeqsu_1156
   03410 Base excision repair
    Aeqsu_1156
   03420 Nucleotide excision repair
    Aeqsu_1156
   03430 Mismatch repair
    Aeqsu_1156
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:asl03032]
    Aeqsu_1156
   03400 DNA repair and recombination proteins [BR:asl03400]
    Aeqsu_1156
Enzymes [BR:asl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Aeqsu_1156
    6.5.1.6  DNA ligase (ATP or NAD+)
     Aeqsu_1156
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Aeqsu_1156
DNA replication proteins [BR:asl03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Aeqsu_1156
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Aeqsu_1156
DNA repair and recombination proteins [BR:asl03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Aeqsu_1156
   NER (nucleotide excision repair)
    Other NER factors
     Aeqsu_1156
   MMR (mismatch exicision repair)
    Other MMR factors
     Aeqsu_1156
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AFL80652
UniProt: I3YUI4
LinkDB All DBs
Position
complement(1240178..1241770)
Genome map
AA seq 530 aa AA seqDB search
MKDFAQLIKKLDSTNKTNEKVAALTAYFQNANDDDKLWTIAILSHRRPKRPVNTTLLRLW
ATEISGIPLWLFEESYHIVGDLAETIALILPTSEEHSEKSLSTFVSEIIALRTLPEEEKK
KYLHYNWLALNYFERFVFNKILTGSFRIGVSQKLMTRALSKATAIDEDILAYKLMGDWTP
EKTTFQKLILEENPEDYLSKPYPFYLAYAVEADFQKDLGAISDWSFEHKWDGIRSQVIIR
NDEVFVWSRGEELVTDKYPEFQRFLSAIPNGTVIDGEILPFGAGEIGNFNALQTRIGRKN
ISKALLKKTPVILNAYDLLEWQGEDIRQKPFSERRKILDELIQKINSEEVGIYLSETMNF
ETWEEAAEERKLSREKRSEGLMLKRKDSPYLVGRKKGDWWKWKIDPFTIDAVLTYAMRGH
GRRANLYTDYTFGLWNDGELVTFAKAYSGLTDAEFRQVDAWIKRNTLERFGPVRSVTPHH
VFEIAFEGIAESSRHKSGIATRFPRILRWRKDKPIAEANTLDDLKALIPK
NT seq 1593 nt NT seq  +upstreamnt  +downstreamnt
atgaaagatttcgcccaacttataaaaaagctagatagcaccaacaaaaccaatgaaaag
gtagcggcactaactgcgtattttcaaaatgcgaatgatgacgataaactttggacgatt
gctattctttcacacagaagaccaaaacgccctgtaaacacaacgttactgcgactttgg
gctacagagattagcggtattccgctttggctttttgaggagagttatcacatagtaggc
gatttggcagaaacgattgctttaattttgccaacttctgaagagcattccgagaaatcc
ctttctacatttgtttcagaaattattgcattacgaacacttcccgaagaagaaaaaaag
aaatatttacactacaattggttagcgttaaattattttgagcggtttgttttcaataaa
atccttacaggaagttttagaattggagtgagtcaaaaactgatgacacgggcactttca
aaagctacagcaattgatgaagatatactcgcatataaattaatgggcgattggactcca
gaaaaaactacttttcagaaattaattttagaagaaaatcctgaagattacctcagcaaa
ccctatccattttacttggcgtatgccgttgaagctgattttcaaaaagatttaggagcc
atttcagattggagttttgaacataaatgggacggaattcgcagccaggtaataattcga
aatgacgaagtttttgtgtggtcgcgaggtgaggaattagtgacagataaataccccgag
tttcaacggtttctttctgcaatcccaaacggaactgtgattgatggtgaaattctgcct
tttggtgctggtgaaattggcaatttcaatgcgcttcaaactagaattggtagaaaaaat
atttcaaaagcacttttaaagaaaacgccagtaattttgaacgcgtatgatttgttggaa
tggcaaggcgaggatattcgccaaaaacctttttcagaaagaagaaagattttggatgag
ttaattcaaaaaattaattctgaagaagtcggaatctatttaagcgaaacaatgaatttt
gaaacttgggaagaagctgcagaagaacggaagctttctagagaaaaacgtagtgaaggt
ttaatgttgaaacgcaaagactcgccttatttagttggccgaaaaaaaggcgattggtgg
aaatggaaaatagatccgttcacaattgatgcggttttaacctatgccatgcggggccat
ggaagaagggcaaatctttatacagattatacattcggtctttggaatgatggtgaattg
gtgactttcgccaaggcttattcaggattaactgatgcagagtttagacaagtagacgca
tggattaaaagaaatactttggagcgttttggcccagtgcgaagtgttactccgcatcat
gtttttgaaatcgcttttgaaggtattgcagaaagcagtcgccataaaagtggtattgca
acccgttttccaaggattttgagatggcgaaaagataaaccaattgccgaggcgaataca
ttagatgatcttaaagcactaattccaaaatga

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