KEGG   Aequorivita sublithincola: Aeqsu_3115Help
Entry
Aeqsu_3115        CDS       T02132                                 

Definition
(GenBank) ATP-dependent DNA ligase LigD polymerase module,ATP-dependent DNA ligase LigD phosphoesterase module
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
asl  Aequorivita sublithincola
Pathway
asl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:asl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Aeqsu_3115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:asl03400]
    Aeqsu_3115
Enzymes [BR:asl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Aeqsu_3115
DNA repair and recombination proteins [BR:asl03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Aeqsu_3115
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AFL82550
UniProt: I3YZY2
LinkDB All DBs
Position
complement(3385499..3387922)
Genome map
AA seq 807 aa AA seqDB search
MSLDKYIEKRKFDQTPEPKGVVNKENARRFVIQRHKASKLHYDLRLEMDGVLKSWAVPKG
PSMNASDKRLAIMTEDHPVGYLNFHGTIPKGNYGAGVMTIWDEGNYNVLLSEIGNDPVQQ
LEKGDLKIEFFGKKIKGTFALVHTKRGDKGNQWLLIKKKDEYSTDLEYDSEIFIENNNVK
SSESYRALDIQSFVKPMLASPAKKIFKDPEWVFELKWDGYRVLSNLFQNNVELYSRNGIS
YNEKFASIAKELKNIPHDCILDGEIVIIDKEGKNDFQKLQNYDDTIENLNLKYYVFDLLH
LNGMDTIALTLLERKSLLPELLNDLKNVFYCDHIQGMGPTLYNRALDAGMEGVIAKKADS
KYSPGYRSENWLKIKNSTTEEALICGYTDSVGGDTLFGSLILGQYNEEDLKYIGNCGSGF
SVTEQKELLAKFQKITIDESPFKEKINLKGRKPHWVKPFLVCEVKFSEKTKNGILRHPVY
KGIRQDKNVEEIVPQPIKEKKSFASNPSTLLDVNGISVPISNLEKVYWPEMGYTKYDLID
YYLNISDFILPYLKDRPQNLHRHPNGINGESFYQKDNDQLPNWVETTKIHSESSQKNIEY
LICQNQATLLYMANLGCIEINPWNSKINNLENPSYTVIDLDPSAENSFAEVIEVAQVAKE
VLDLFKIEGYCKTSGSSGIHIYLPLDELYSYQEARDFTKLLCYYIQERLPKLTSMERAVK
NRKGKIYLDYLQNRRGQTLASVYCVRPKVGATVSTPISWNELKKGLQLEDFTIKTVPKRL
EKIGDIFQGVLGQGINIENALGTISEK
NT seq 2424 nt NT seq  +upstreamnt  +downstreamnt
ttgagtttagataaatacatagaaaaaagaaagtttgatcagacgcctgaacccaaagga
gttgtaaataaggaaaatgcgagacgttttgttattcaacgtcataaagcttcaaaatta
cattacgatttaagattagaaatggatggagttttaaagagttgggctgttccaaaggga
ccttcaatgaatgcttctgacaaacgcttggccattatgaccgaggatcatcctgtaggt
tatttaaattttcatggcaccattcccaaaggaaattacggagcgggagtaatgacaatt
tgggacgagggaaattataatgtgttattaagtgaaataggaaatgacccagttcaacaa
ttagaaaaaggggatctgaaaatagaattctttggaaagaaaataaaaggaacatttgct
ctcgttcatactaaaagaggcgataaaggcaatcagtggctattgataaagaagaaggat
gaatattcaaccgatttagaatacgattctgaaatatttattgaaaacaataatgtaaaa
agttcagaaagttatagagctttagacattcagagctttgtaaagcctatgcttgccagt
cctgcaaagaaaattttcaaggatcctgaatgggtttttgaattaaagtgggatggatat
cgtgtactctcaaatctatttcaaaataatgtggaactatattcacgtaatggaatttca
tataatgagaaatttgcaagtattgcgaaggagttgaaaaatattccacacgattgcata
ttagatggagagatagttattatagacaaggaaggaaaaaacgattttcaaaaacttcag
aattatgatgataccattgaaaatttaaatttgaaatattatgttttcgacttacttcat
ctcaacggaatggatacaattgccttaaccctattagaacgtaaaagtctgttgcctgaa
ttattaaacgacctaaaaaacgtcttttactgcgatcatatccaaggaatggggccaaca
ttatataatcgtgcattggatgcaggaatggaaggggtaatagcgaagaaagcagattcc
aaatattctcccggatatagaagtgaaaattggttgaaaattaaaaatagcaccacggaa
gaagccttaatttgtggctacactgattctgtaggtggtgatacattattcggatcgctt
attttggggcaatataacgaagaagatttaaaatatatagggaattgtggttctggattt
tcagttacagaacaaaaggagttgttggcaaaatttcaaaaaattacaattgatgaaagt
ccatttaaagaaaaaataaatttaaaaggtagaaaaccacattgggtgaaaccattttta
gtttgtgaggtaaagttttcggagaaaactaaaaatggaattttgagacatcctgtctat
aaaggtataagacaagataaaaatgttgaagaaattgtccctcaacctattaaggaaaaa
aaatccttcgcttcaaatccttccacacttttagatgtaaatggaatatcggtaccaatt
tctaatttagagaaagtgtattggccagaaatgggttatacaaaatatgacttgatagat
tactacttaaatatttccgacttcatattaccgtatttgaaggatcgtcctcaaaattta
caccgccatcccaacggaattaatggagaatctttctatcaaaaggataacgatcagcta
ccaaactgggttgagacaactaaaattcattccgaatcttcccaaaaaaatattgaatat
ttaatttgtcaaaatcaagcaaccttactctatatggctaacttgggatgcatagaaata
aatccttggaattctaaaattaataatctcgaaaatccgagttatacggtaatcgatttg
gacccttcagctgaaaattcatttgctgaggtaattgaggtagcccaagttgctaaagaa
gttctggacttatttaaaattgaaggctattgcaaaacctctggctcctctggaattcat
atttatttgcctttggatgaactctatagttatcaggaagcaagagattttacaaaactg
ctttgctattacattcaagagcgtttgccaaaactaacaagtatggagagagctgtaaaa
aatagaaaaggaaaaatatatctagattacctgcaaaataggcgagggcagacattagct
tcagtatattgcgtgcgtcctaaagttggtgcaacagtttcaacgccgatatcttggaat
gaactgaaaaaaggtttacaattagaagattttactattaaaaccgttccaaagcgtctg
gaaaaaataggtgacatatttcaaggagtattagggcagggtatcaatatagaaaatgct
ttaggtacaatttctgaaaaataa

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