KEGG   Alligator sinensis (Chinese alligator): 102388312Help
Entry
102388312         CDS       T02922                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
asn  Alligator sinensis (Chinese alligator)
Pathway
asn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:asn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    102388312 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:asn03400]
    102388312 (LIG4)
Enzymes [BR:asn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102388312 (LIG4)
DNA repair and recombination proteins [BR:asn03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     102388312 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C BRCT DNA_ligase_IV BRCT_2 RNA_ligase mRNA_cap_enzyme Ribosomal_S5_C APG17
Motif
Other DBs
NCBI-GeneID: 102388312
NCBI-ProteinID: XP_006037973
UniProt: A0A1U7SWK4
LinkDB All DBs
Position
Unknown
AA seq 914 aa AA seqDB search
MMSSTPAAQSSSKQTVASQVPFADLCSTLERMQKCKSRPEKTKYFKDFLDSWRKFHGALH
KKEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRT
PAGSRGDAGDFAMTAYFVLKPRCPEQGKLTIEQVNELLDSIASNNAAKRKDLVKKSLLQL
ITQSSALEQKWLIRMIIKDLKLGASQQTIFSIFHPDASELHNVTTDLEKVCRQLHDPSVS
LTDVSIALFSAFKPMLAAIANIQQIEKQMNNQCFYIETKLDGERMQMHKDGDVYKYFSRN
GYDYTQQFGPSPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRM
VEESDLQTCFCVFDVLMVNDQKLGHEILSKRYEILNEVFTPVTGRMHVVHKTRGSTRKEV
VDALNEAIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVTGLMDELDLLIVGGYWGKG
LRGGMMSHFLCAVAETPTPGGKPSVFHSICRVGSGYTMKELYDLGLKLAKHWKPYRKREP
PCNILCGTEKPEVYIEPCNSVIVQIKAAEIVTSEMYKTDCTLRFPRIEKIREDKEWHECM
TLSMLEQLRGRASGKLASKHLDVANDEPQEKKRKTVPKTKKIIGIAEQFKAPDLSNVSKV
SNVFDDVEFCVLTGTENHSKSDLESKIAECGGNVVQNPGPDTYCIIAGIENVRVKNVISS
NKHDVVRAVWLLQCFQTKMFVPWQPAFMIHMTPDTKLHFAREFDCYGDSYSADIDVAQLK
EVFSRVNNTIDAKMPLEVIGELEERYSWDSHPLSMFRRNTIYLDLYAVVNDPKTKICGTR
LTVRALDLRFYGAKVVSQLKEGVSHVVMGEDRARVKEIKMLRRTFEKKFKILSELWVTDS
IREGKLQSENQYLI
NT seq 2745 nt NT seq  +upstreamnt  +downstreamnt
atgatgtcatccacacctgctgcacagtcatcctctaagcaaactgtagcatcacaagtg
ccttttgcagatctctgttcaactttagaacggatgcagaaatgcaaatcccgcccagag
aaaaccaagtatttcaaggattttttagattcatggaggaagtttcatggtgccctccat
aaaaaggagaaggatgtcacggactctttttatcccgcaatgcgacttattcttccacaa
ctggaaagagaaagaatggcttatggaataaaagaaaccatgcttgctaagctgtatatt
gaactacttaatttacccaaagaaggaaaagatgccctaaagcttttaaattatagaaca
ccagctggttcacgtggagatgctggggactttgcaatgactgcctactttgtattgaaa
cccaggtgcccagagcaaggcaaattgactattgaacaagtgaatgaacttctagattca
attgccagtaataatgctgctaaaagaaaggacctggtaaagaaaagtctccttcaatta
ataactcagagctcagcacttgaacaaaagtggttgatccggatgattataaaggatcta
aaacttggtgcgagtcagcaaactatattttccatttttcatcctgatgcttccgaatta
cacaatgtcacaaccgatctggagaaagtttgcagacagctgcatgacccttctgtatct
ctcactgacgtttccattgctttgttttctgcctttaaaccaatgcttgcagctattgct
aatatccagcaaattgagaagcaaatgaacaaccagtgtttctacatagaaactaagcta
gatggtgagcgtatgcagatgcacaaagatggagatgtatacaaatatttttccagaaat
ggatatgattatacccagcagtttggcccatctcccctagaaggttcgttaactccattt
attcataatgtgtttaaaagtaacatacaaaactgcattcttgatggtgaaatgatggct
tataatcccaacacacaaactttcatgcagaagggaaacaaatttgacataaaaagaatg
gtggaggaatctgatctgcaaacttgcttctgtgtgtttgatgtgttaatggttaatgac
cagaagttgggtcatgagatactaagcaaaaggtatgagattctgaatgaggtatttacc
ccagtcacaggcagaatgcatgttgtgcacaaaacacgcggtagtacccggaaagaagtg
gtcgatgctctgaatgaagcaatagacaatagggaagaaggaatcatggtaaaagatcct
atgtccatctacaagccagacaaacgaggagagggctggctgaaaatcaaaccagagtat
gtcactggcttgatggatgaattagatcttttaattgttggtggctactggggaaaaggg
ttgcgtggtggcatgatgtctcattttctgtgtgctgttgcagagacacccactcctggt
ggaaagccatctgtttttcactctatttgtcgtgttggttctggctatactatgaaggaa
ctttatgatcttggtctgaagctggctaagcactggaagccttaccgtaaaagagagccc
ccttgtaacattttatgtgggactgagaaacctgaagtctacattgaaccttgtaactca
gtcatagttcagattaaagcagcagaaattgttactagtgagatgtacaaaaccgactgc
actttacgatttcctcgaattgagaaaataagagaggacaaggagtggcatgaatgcatg
actttgagtatgttagagcagctcagaggcagagcgtcagggaagctagcatcaaagcat
ctcgatgtagctaatgatgaaccacaagaaaagaaacggaaaactgtgccaaagactaag
aaaataattggtattgctgagcagtttaaagcccctgatctttctaatgtaagcaaggtg
tcaaatgtttttgacgatgttgagttttgtgttcttactggaacagaaaaccattcaaaa
tccgaccttgaaagcaaaattgcagaatgtggtggcaatgtagtacagaaccctggaccg
gacacttattgcatcattgcaggaattgagaacgtaagagtgaagaacgttatctcttcc
aataagcatgatgttgtgagagcagtgtggcttttacagtgttttcaaaccaaaatgttt
gtaccatggcagcctgcttttatgattcacatgactccagacacaaaactacattttgcc
cgtgaatttgactgttatggtgacagctactcggcagatatagatgtggctcaactaaag
gaagtgttctcaagagtcaataatactattgatgcaaagatgcctctggaagtaattggt
gaattggaagaacggtactcatgggacagtcatccactcagtatgtttaggcgaaacacc
atatacctggatctttatgctgttgttaatgatcccaagaccaagatctgtggaacaagg
ctaacagttagagctttggacctccgtttttatggagcaaaagttgtctcacagctaaag
gaaggagtgtcccatgtagttatgggagaagatcgtgcccgtgtgaaagaaataaaaatg
cttagaagaacatttgaaaaaaaatttaaaattctatctgaactgtgggtaacagattcc
ataagggaaggaaagctgcagagtgaaaatcaatacttaatttag

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