Alteromonas stellipolaris LMG 21861: AVL57_04160
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Entry
AVL57_04160 CDS
T04545
Name
(GenBank) RNA polymerase-binding ATPase
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
asq
Alteromonas stellipolaris LMG 21861
Brite
KEGG Orthology (KO) [BR:
asq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asq03021
]
AVL57_04160
Transcription machinery [BR:
asq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
AVL57_04160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Nucleoporin_C
Flavi_DEAD
AAA_22
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AMJ73241
LinkDB
All DBs
Position
complement(692730..695558)
Genome browser
AA seq
942 aa
AA seq
DB search
MSSGNPFSIGQRWLSNTETELGLGAVISVDFRSVEVFFPATGEARMYTKQDAPLTRLVFD
IGETIKSQDGWQMTISEIEESQGVCIYFGIREDTKAQVRLSETLLDHHIRLNQPEKRLFS
EQLDHPKWFDLRLNALNHQYDYLRSSTLGLAGARISLIPHQLHIASEVGGRHAPRVLLAD
EVGLGKTIEAALIIHQQLRTGRAQRVLILVPDSLVHQWLVEMLRRINLPFAIFDESRCEA
LDDDGETNPFDNDQLVLCSIDFLSQSEKRQQQIQAASWDLMVVDEAHHLAWSADAPSAEY
TLVEALANETPGVLLLTATPDQLGHESHFARLRLLDPARFHSYEAFLTEESRYSQLADAV
APLLSDTTPDEKQRTKLTDFAPDVMENAGDLAQPEARRELVHQLIDCHGTGRMLFRNRRA
NIEGFPDRVLLGYQLELPVVYESAVTGGDLTHALYPERMPSVVNSWMDEDPRVGWLLDFM
QSVKPEKILLICASARTAQELGEVIRTQTGVRHSVFHEGMTIVERDKAAHYFSDEEDGAQ
ILLCSEIGSEGRNFQFAHHLVLFDLPVTPDLLEQRIGRLDRIGQTQTVEIHVPYLKNTAQ
HVLVDWYHEGLNAFEKTCPTGSGVFDDVKTLLIGACLHPHDLHTRDELINLSTTLNSQLV
AQLEAGRDRLLELNASGEGRVEQLLEDIILLDNSQDLSRFMGRLFDAIGVQQEEKGSDCF
ILMPTESMVSQLPGLDPEGMTVTYKRRVATTLENVQFLSWDHPLVHTAIDLVLSDVHGKS
SIGFIADPDLPKGAYWLEALFVLDANAPKALQLGRFLPQTPLRICLDAQGNQVDLTFEIK
RKVNRKISHQLIKALQQPLTLAIENSRKLAHQQANQKLHDALQDMHKTLNSEIQRLVDLQ
KRNPSVRDSEIEFIENQMNALDKVIQGADVQFDALRLVVNNP
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaggaaatccgttttccattggtcagcgttggttaagtaatactgaaaccgaa
ttaggtttaggcgctgttattagtgttgattttcgctcagttgaggtgtttttccctgcc
acgggtgaagcacgaatgtatacaaaacaagatgcaccacttacccgtttagtctttgat
attggcgaaacaataaagagccaagacggctggcaaatgacgatttctgaaattgaagaa
agtcagggcgtttgcatttatttcggtatccgcgaagacaccaaagcacaggttcgccta
tctgaaaccttgcttgatcaccatattcgattaaaccaacctgaaaagcgcttgttcagc
gagcaacttgaccaccctaagtggttcgacttacgtcttaatgccctgaaccaccaatac
gattatttacgctcaagcaccttgggcttagcgggtgcacgtatctcgctcattccccac
cagctacatattgcctctgaagtgggtggacgccacgcaccacgtgttttacttgccgat
gaagttggcttaggtaaaaccattgaagccgcgcttattattcatcagcaactgcgcacg
gggcgcgctcagcgagtattaattttagtgcctgattcattggtacatcagtggttagtt
gaaatgctgcgcagaattaatctacctttcgctatttttgatgaaagccgatgcgaagct
ttagatgatgatggggaaaccaacccatttgataacgaccagttagtgctatgtagcata
gactttttaagtcagagcgaaaaacgtcaacaacaaattcaagcggcatcgtgggattta
atggtggttgatgaggcccatcaccttgcgtggtctgccgatgccccttctgctgaatac
actttggtggaagcgttggctaatgaaacgccaggtgtattgctattaaccgcaacacca
gatcaacttggccatgaaagccactttgcccgcttgcgattactcgaccctgcccgcttc
catagttacgaagcgtttttaacagaagagtcgcgttacagtcagcttgctgacgctgta
gccccgttactttcagacaccacaccggacgaaaagcagcgcactaagctaaccgacttc
gccccggatgtgatggaaaatgcaggtgatttagcacaacctgaagcacgccgagaacta
gtacatcagcttattgattgccacggtactggcagaatgctgtttagaaaccgcagagcc
aatattgaaggctttcctgaccgcgtattgcttggctaccaacttgaactgccagtggta
tatgaaagtgcggtaaccggtggtgatttaacccatgcgttataccctgagcgtatgcca
agcgtggtgaatagctggatggatgaagatcctcgggtaggctggttacttgattttatg
caatcggtaaaaccagaaaagatattactgatttgtgccagtgcgcgcaccgcacaagaa
cttggtgaagtcattcgcactcaaaccggtgtacgtcatagcgtattccacgaaggcatg
accattgtagaacgagacaaagccgcccattatttttctgatgaagaagatggcgcgcaa
atattgctgtgtagcgaaattggcagtgaagggcgtaacttccaatttgctcatcacttg
gtgttattcgatttacccgtcactcccgacttacttgaacaacgaattggtcgcttagat
cgtatcggtcaaactcaaaccgttgaaattcacgtgccttatttgaaaaacaccgctcag
catgtgttggtggattggtatcatgaagggcttaatgcgttcgagaaaacctgccctacc
ggctcaggtgtgtttgacgacgtaaaaaccttgttgattggagcgtgtttgcatcctcac
gatctccatactcgtgatgaacttatcaacttaagtaccacgttaaatagtcagttagtg
gcacagttggaagccggccgtgaccgtttattagaacttaatgcctctggtgaaggccgc
gttgagcagttgcttgaagacatcatattgcttgataactcgcaagatttgtcccgtttt
atgggtcgtttgtttgatgctattggtgttcagcaagaagaaaaaggcagcgattgcttc
attcttatgccaacagaatctatggttagccaattaccggggcttgaccctgaaggcatg
accgtaacctataagcgccgagttgctacaaccctagaaaatgtacagtttttaagttgg
gatcaccctcttgtgcataccgctatcgatttagtgcttagtgatgtgcatggtaaaagc
agcattggctttattgctgaccctgacttgcccaaaggcgcttactggttagaggctttg
tttgtgctagatgccaacgccccaaaagccctccagcttggccgcttcttacctcaaacg
ccactgcgtatttgtttagatgcacaaggtaaccaagtagatttaaccttcgagataaag
cgtaaagtaaaccgcaaaatttcgcatcagttaataaaagcgcttcaacagccgcttacc
ttagcaattgaaaacagccgtaaactggcgcatcaacaagcgaatcaaaagctacacgat
gcactgcaagacatgcataaaaccctaaacagtgaaatccagcgtttagtcgatttgcag
aagcgtaacccgtcagtacgtgacagtgaaatcgagtttattgaaaatcaaatgaacgca
ttggacaaagtaatacaaggcgctgatgtgcaatttgatgcccttcgtttagtggtgaat
aacccttaa
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