Alteromonas stellipolaris LMG 21861: AVL57_18675
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Entry
AVL57_18675 CDS
T04545
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
asq
Alteromonas stellipolaris LMG 21861
Pathway
asq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVL57_18675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asq03019
]
AVL57_18675
03016 Transfer RNA biogenesis [BR:
asq03016
]
AVL57_18675
Enzymes [BR:
asq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AVL57_18675
Messenger RNA biogenesis [BR:
asq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AVL57_18675
Transfer RNA biogenesis [BR:
asq03016
]
Prokaryotic type
tRNA degradation factors
AVL57_18675
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
OB_Dis3
Rho_RNA_bind
UPF0158
Motif
Other DBs
NCBI-ProteinID:
AMJ75808
LinkDB
All DBs
Position
complement(4128922..4131234)
Genome browser
AA seq
770 aa
AA seq
DB search
MSDDPHYQREKEKYENPVASREFLMSLLKEEDKPLSFLEICTAVNAEEEDARIGIQRRLR
AMEREGQVQFTRQKKYILQDQDELFRGKVIGHRDGFGFLRPEDKSGDLFISAGQMKLFLH
DDIVEARVSGTDRRGRKEAFITQVVEPRSEPIVGRYFVEQGFGMVVPDDSRLQYEIVIPP
EHVHGARMGQIVVVELTQRPRRKMSPVGKIVEVLGEHMAPGMEIEMALRTFDIPHQWPKG
VTKQVKSLTEQVPDEAKEGRIDLRQLPLVTIDGEDARDFDDAVYCEPLDDGGWQLWVAIA
DVSYYVRNGTALDDEAQQRGNSVYFPEQVIPMLPEVLSNGLCSLNPEVDRLCMVCEMTIT
AQGKLETYQFYEAVMNSHARLTYTKVWQILQGDKDLHQRYEAQVPHLRHLHDLYRSLKKA
RQHRGAIEFETQESKFVFNAQRKIENIVPLIRNDAHKLIEECMILANVSAALTLSENEAP
TLYRVHDKPDADRLTAFTSYLAEIGVPHKITDEALPADFTDVVLKTRGRPDEELIQTMLL
RSMKQAIYDGDNLGHFGLALEAYAHFTSPIRRYPDLVVHRALKGIIAKQKGKNTVSGAKN
YTVEEIEQLGEQCSMTERRADDATRDVADWLKCEFMLDHVGDTFEGVVSSVTNFGLFVRL
TEYHIDGLVHITSLDDDFYHYDQVKQILAGESGHRQFRLGDTVEVKVAAVNLDERKIDLL
LDKSMLRGPGGKKVKVASAKKPPRNAKRGPKKAAPKGKGAPSRSKKGGKR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgatccgcattatcagcgcgagaaagaaaagtacgaaaacccggtagcaagc
cgggagtttttgatgagtctattgaaagaagaagacaaaccactgtcttttcttgaaata
tgtacggcagtaaatgccgaagaagaagatgcccgcattggcattcagcgccgccttcgc
gccatggagcgagaggggcaagtgcagttcacccgtcaaaagaagtacattcttcaagat
caagatgagttgttccgcggtaaagtcattggccaccgagatggcttcggctttttacgc
cccgaagataaaagcggtgacctgttcattagcgcaggccaaatgaaactgtttttgcat
gacgatattgtagaagcgcgagtaagcggtactgaccgccgtggccgcaaagaagccttt
attacacaggtggtagagcctcgttcagagccgattgttggccgctactttgtagagcaa
gggtttggcatggttgtgccagacgacagtcgtttgcagtatgaaattgttattccgcct
gaacatgtacatggcgcccgcatggggcaaattgtggtggttgagctaacgcagcgtcct
cgccgtaaaatgagcccagtgggtaaaattgtcgaagtactaggtgaacatatggcacct
ggtatggaaatagaaatggcgcttcgcacctttgatattccgcatcagtggccaaaaggc
gttaccaagcaagttaaaagccttaccgaacaagtgcccgatgaagcaaaagaagggcga
atcgatttacgtcagcttccccttgttaccattgatggtgaagatgcgcgggattttgat
gatgccgtatattgtgaaccgctagacgatggtggctggcagctttgggtagccattgcc
gatgtcagttactacgtacgaaatggcacagcactagatgatgaagctcagcagcgaggc
aactcggtgtatttccccgagcaagttattcctatgctaccggaagtgctttccaacgga
ttgtgttcactgaaccctgaagttgatcgcttgtgtatggtgtgcgagatgaccattact
gcgcaaggtaagttagagacctaccaattctatgaagccgtgatgaattcacatgctcgc
ctaacttacaccaaagtatggcaaatattgcaaggcgacaaagacttgcatcaacgttat
gaagcacaagtgccgcatttgcgtcatcttcacgatttgtatcgttcgttgaaaaaagcc
cgtcagcaccgcggtgctattgagtttgaaacccaagaaagtaagtttgtatttaacgca
cagcgtaaaattgaaaacatcgtgccgcttatccgtaacgatgctcataagcttattgaa
gagtgcatgattttagcgaacgtcagtgctgcacttacactatcggaaaatgaagcacct
acgctttatcgagtacacgacaaaccagacgccgataggctgacggccttcaccagctac
ttagctgaaataggtgtaccgcataagattaccgatgaagccttaccggcagatttcacc
gacgtggtattaaaaacccgtggtcgccctgacgaagagcttattcaaaccatgttgctt
cgttcaatgaagcaggctatttatgatggtgacaatctaggccacttcggcttagccctt
gaagcttatgcgcactttacgtcgcctattcgtcgataccctgatttggtagttcaccgt
gcactgaaagggattattgccaagcaaaagggcaaaaatacggtttcaggtgcaaagaat
tacaccgttgaagaaattgaacagctaggcgaacagtgctcgatgactgagcgtcgtgcc
gacgatgctacccgtgatgttgcagactggcttaagtgtgaattcatgcttgaccatgta
ggtgacacttttgaaggcgtagtcagttcagtgacaaactttggcttgtttgttcgctta
accgaatatcacattgacggcctagtacacattacctcgctcgatgacgatttctatcac
tacgatcaagttaaacaaatactggcgggtgagtcgggacatcgtcagtttagattaggc
gataccgtagaagtgaaagtggctgcggttaacctagatgaaagaaagattgatttattg
ctggataagtctatgctgcgcggccccggcggcaagaaggttaaagtagccagtgcgaag
aagccgcctagaaatgccaagcgaggccctaaaaaagctgcgcccaaaggcaagggggca
ccatcgcgttcgaagaaagggggtaaacgttaa
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