Achromobacter spanius: CVS48_01325
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Entry
CVS48_01325 CDS
T05274
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asw
Achromobacter spanius
Pathway
asw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVS48_01325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asw03019
]
CVS48_01325
Enzymes [BR:
asw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CVS48_01325
Messenger RNA biogenesis [BR:
asw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CVS48_01325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
LBP_BPI_CETP_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUA54790
LinkDB
All DBs
Position
complement(258735..260231)
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AA seq
498 aa
AA seq
DB search
MTESTQSVAPTADAPAPTFADFGLHPLLLQSIAETGYTIPTPIQAQAIPVVVEGRDVMGA
AQTGTGKTAAFTVPILHRLMPLANASASPARHPVRALILTPTRELADQVFESVKRYSKQT
PLRSAVVFGGVDIGPQKEALRRGCEILVATPGRLLDHVEQKNVNLSQVGILVLDEADRML
DMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNQPVEIEVAARNATATNITQ
IAYKMPSDAKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQA
DRMKALEAFKAGDLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGAS
GEAIALFTPDEERFLLDIEKLIKREVPRGTLDLPADAVARSHRRSEERSGSSSREGREGR
EGREGGRDSRGDRGSRSSDRRSGYTSSGPRQPVDDFFLKPYEPSPSASSVEEQAPKNDSG
SSAPKRQVAVLLGGSRKN
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatccactcaatccgtagcacccaccgccgacgcgcccgcgccgacgtttgcc
gattttggactgcacccgttgttgctgcagtccatcgccgaaaccggctacaccattccg
acgcccattcaggcgcaagccatccctgtcgtggtggaagggcgcgacgtcatgggcgcc
gcccagaccggcaccggcaaaaccgccgcgttcaccgtaccgatcctgcatcgcctgatg
ccgttggccaatgccagcgcatcgcccgcgcggcacccggtgcgcgcactgatcctcacg
cccacgcgcgagttggcggaccaggtgtttgaaagcgtcaagcgctacagcaagcagacg
ccgctgcgttcggccgtggtgtttggcggcgtggacatcggtccgcaaaaagaagcgctg
cgtcgcggttgcgaaatcctggtggctacacctggccgtctgctggaccacgttgagcaa
aagaacgtgaacctgagccaggtcggcatcctggtgctggacgaagcggaccgcatgctg
gacatggggttcttgccggatctggaacgcatcatccgcctgttgcccgcgcagcgtcag
ggcctgcttttttcggccaccttcagcaacgaaatccgcaagctggggcgttcgtacctg
aaccagccggtcgagatcgaagtcgcggcgcgcaacgccaccgccacaaatatcacgcag
atcgcctacaagatgcccagcgacgccaagcgcgccgcggtcgtgcatctggtgaagtct
cgcgggctgaagcaggtcatcgttttttcgaataccaagatcggcacggcgcgccttgcc
cgcgaacttgaacgcgatggcgtcaaggccgaatcgatccacggcgacaaaacgcaggcg
gaccgcatgaaggcgctggaagccttcaaggccggcgacctggaagtgcttgtcgccacc
gacgtggccgcgcgcggcctggacgtggccggcgtgccgtgcgtcatcaactacgacttg
ccgtacaacgctgaagactacgttcaccgcatcggccgtaccggccgcgcgggtgcctcg
ggcgaagccatcgcgctgttcacgcccgacgaagaacggtttttgctcgacatcgaaaag
ctgatcaagcgcgaagtgccgcgcggcacgctcgacctgccggcagacgccgtggcgcgc
agccaccgccgcagcgaagaacgctccggttcgtcctcgcgcgaagggcgtgaggggcgt
gaagggcgcgaaggcggccgtgacagccgtggtgatcgcggtagccgttcgtcggatcgt
cgttcgggttacacctccagcggcccgcgtcagccggtggacgatttcttcctgaagcct
tacgagccttcgccctcggcctcgtccgtcgaagagcaagcgcccaagaacgacagcggt
tcgtccgcgcccaagcgccaagtggcggtactgctgggcggttcgcgcaagaactga
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