KEGG   Achromobacter spanius: CVS48_18780Help
Entry
CVS48_18780       CDS       T05274                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
asw  Achromobacter spanius
Pathway
asw03030  DNA replication
asw03410  Base excision repair
asw03420  Nucleotide excision repair
asw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:asw00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    CVS48_18780
   03410 Base excision repair
    CVS48_18780
   03420 Nucleotide excision repair
    CVS48_18780
   03430 Mismatch repair
    CVS48_18780
Enzymes [BR:asw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CVS48_18780
    6.5.1.6  DNA ligase (ATP or NAD+)
     CVS48_18780
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CVS48_18780
DNA replication proteins [BR:asw03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CVS48_18780
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CVS48_18780
DNA repair and recombination proteins [BR:asw03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CVS48_18780
   NER (nucleotide excision repair)
    Other NER factors
     CVS48_18780
   MMR (mismatch exicision repair)
    Other MMR factors
     CVS48_18780
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AUA57878
UniProt: A0A2K8S7E8
LinkDB All DBs
Position
complement(4169784..4171409)
Genome map
AA seq 541 aa AA seqDB search
MKRFAALYQELDRSTATLDKRAALVAYFRDAPPRDAVWALYLLAGGKISSARRKIAGVAE
LRAWAAAASGTPPWLLDASYDQVGDLAETLALLMPDPEPAAEQEGQASPERGLADWIEEV
LLPAANRDEAKRRDIIVPAWRSLPFDQRLVFNKMLTGALRVGVSQRMVQQALAEMSGVPI
ARIAQRMLGTWTPSPAFLRDLLSTEALPGDRQQPYPFFLASPLEGEPAKLGPIDDWLIEW
KWDGIRAQLIRRHGEVALWSRGEERLDGRFPEVEAAAHALQVDCVLDGELLAWQEDATGP
MPFSALQTRIQRLKPGPKWLAEAPVRMLAYDLLEENGADLRDRPQAERRAMLEALLQRHP
NPRLSLSPTVAPGSWEAAAELRLESRERDVEGFMLKRAAAGYQSGRRRGDWWKWKIDPLT
IDAVLLYAQSGHGRRSTLYTDYTFGLWQGDALVPIAKAYSGLDDKEILELDRWLRAHTRE
RFGPVRSVEPVQVFELGFEGVNLSKRHKSGVAVRFPRILKWRRDKPAAEADQLDTLKALA
R
NT seq 1626 nt NT seq  +upstreamnt  +downstreamnt
atgaagcgattcgcggcgctgtatcaggaactggaccgtagtaccgccaccttggacaag
cgggcggcattggtggcgtactttcgcgatgcgccgccgcgcgacgcggtctgggcgctg
tatttgctggcgggcggcaagatcagcagcgcgcgccgcaagatcgcgggcgtggccgaa
ctgcgcgcctgggccgccgccgcctccggcacgccgccctggctgctggacgccagctat
gaccaggtgggcgacctggccgagaccttggcgttgctgatgccggatcccgaacccgcc
gccgaacaagaagggcaggcgagtcccgagcgcggcctggccgattggatcgaagaagtg
ctgctgcccgccgccaaccgcgacgaagccaaacgccgcgacatcatcgtgccggcctgg
cgcagcctgccgttcgaccagcgcctggtgttcaacaaaatgttgaccggcgcgctgcgg
gtgggcgtgtcgcagcgcatggtgcagcaggcgctagccgaaatgtcgggcgtgcccatt
gcccgcatcgcgcaacgcatgctgggtacgtggacgcccagccccgcctttctgcgcgat
ctgctcagcaccgaagccttgcccggcgaccgccagcagccatacccgttctttctggcc
tcgccgctggaaggcgagccggccaagctcggccccattgatgattggctgatcgaatgg
aaatgggacggcatccgcgcccaactgatccgccgccatggcgaagtggcgctgtggtcg
cgcggcgaagaacggctggacggccgctttccggaagtcgaagccgccgcccacgcgctg
caagtggactgcgtgctggacggcgaactgctggcctggcaggaagacgccaccggaccc
atgccgttttcggccttgcaaactcgcatccagcggctcaagcccggccccaagtggctg
gccgaggcgccagtgcgcatgctggcctacgacctgctggaggaaaacggcgccgacctg
cgcgaccgaccgcaggccgagcgccgcgccatgctggaagcgctgctgcaacgccatccc
aacccgcgcctgtcgctgtcgcccacggtggcgccgggcagttgggaagccgccgccgaa
ttgcgcctggaatcgcgcgagcgcgacgtggaaggcttcatgctcaagcgcgccgccgcc
ggctaccaaagtggacgacggcgcggcgattggtggaagtggaagatcgacccgctcacc
atcgacgccgtgctgctgtatgcgcagtccggccatggccgccgcagcacgctgtacacc
gactacaccttcggcctgtggcaaggggatgcgctggtgcccatcgccaaggcgtattcc
gggctggacgacaaggaaatcctggaactcgaccgatggctgcgcgcccacacgcgcgaa
cgcttcggccccgtgcgctcggtggagccggtgcaggtgttcgagctgggctttgaaggc
gtcaacctgtccaagcgccacaagtcgggcgtggccgtgcgctttccgcgcatcctcaaa
tggcggcgcgacaaacccgccgccgaggccgaccagttggatacgctgaaggcgctggcg
cgatga

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